Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01003 ATGGGTTGCTTATGCAGTTGTTTAAGAGCTTCGACTCCTCCTCGTCGGAGAAATAGAGACCAGACTCCGCCGCCTTCACGGAGTACTACTCCTTCTTATTATGGAAATAGAGATTTTAACTCTAATTTTACCTACTCTTATAGGCATAGAGGATCAACTTCTGCACCATTTCCATTAGCAAAGAATCCTGCTGCTCCTGAGCTACTAGAACCTAATTTCGCCGATTCCACTTCCATAGATTGGTCAGATGAATCTAAATCATCCGAAGGAATTTCATGTCCTATATGTTTTGAAGGGTATACTATTGAAAATCCTATGATTACTATAGAGTGCAGTCACCATTATCACCTTAGCTGTATATATGAATGGATGAATAAGAGTGATACTTGTCCAGCTTGTAGACGGGTGATAATCTTTGACAATCCTGAATTGCACGAGTTCAGATATTGA 450 0.3956 MGCLCSCLRASTPPRRRNRDQTPPPSRSTTPSYYGNRDFNSNFTYSYRHRGSTSAPFPLAKNPAAPELLEPNFADSTSIDWSDESKSSEGISCPICFEGYTIENPMITIECSHHYHLSCIYEWMNKSDTCPACRRVIIFDNPELHEFRY 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01003 149 MobiDBLite consensus disorder prediction 23 38 - -
Vivi2g01003 149 SMART ring_2 93 133 IPR001841 -
Vivi2g01003 149 SUPERFAMILY RING/U-box 84 140 - -
Vivi2g01003 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 145 IPR013083 -
Vivi2g01003 149 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 54 141 - -
Vivi2g01003 149 MobiDBLite consensus disorder prediction 11 38 - -
Vivi2g01003 149 ProSiteProfiles Zinc finger RING-type profile. 93 134 IPR001841 -
Vivi2g01003 149 Pfam Ring finger domain 92 134 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01003 Vivi-Chr2 38903663 38905463 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01003 93 143 C3H Transcription Factor Family AT5G38895 60.784 2.91e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01003 - - vvo:131648881 320.857