Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01000 ATGAAGGAAACTCGCAGGCTAGAGTCATCTAGATTCTTAACTATCTTTATACCACATCTCTTATTGTTCATCTTTTTCTTAGTTCATTTAACATCTTGTGATGATTCATTAAACATTCCCCCTTCAGACAAAGTCCTCCTTAACTGTGGTTCATCTGGATCTTCAACATTCAATGGTCTAAACTGGATAGGAGACATTGGAACAAATTTCTTCCAAACATCATATGATACAACTTCATCAGCAACACTCTTACGCTCCAACTCAAACAAAGTAGCACCCAAAATTCCATACCTAACAGCAAGAATAATTCATCATTCTCCATTCACCTACTCATTCCCCTTCTCTTCTCCTGGCCTTAAATTCATTCGTTTATACTTTCTCTCAACTTCATATTTACCAATATACTCTTCCAACACTAAGTCCTACTTTTCAGTCAAATCTGGTCCATACACTCTTGTTAACAATTTCAATCCATTACTTGCTGCACAAGAAATCAACTCATCTTATGTCACTAAAGATTTCTTTGTCAACATCAAACAAAAGAGCCTCAACATCACTTTCACTCCATCTCCTCTAATTCACAAAGCTTATGCTTTTGTAAATGGAATTGAAACATTCTCAGTACCCAATAACTTATTCTCTCATGCTTCAAATTCTAATGTTTCTGTTCCTTACCTTGGACACAAAGAACCCATTTTTATCAACAATGAATATGCTTTTGAGAAGCTTTACATGGTTAACATAGGAACTGGATCTTACTATCAAGTTGTAAATGCATTTGGGTCATGGCTTGATGGTATCGACTTCATTTCTGGTTCACAATATGGAACTGTTCTTATCGTGAGAGAGGATGGAATTGATATGAATGAGAGTCTTCTCAATTCAAATGACATTAACTATTCAGCACCGCTCGAGGTATACTTAACTGCAAGGACAATGGGAAGCAATGGAGATTCAAACATGAGGTACAATTTAACATGGTCATTTTTCGTTGATTCTGGATTCAGGTACCTTGTTAGACTTCATTTCTGCGAGTTATCTATGTTGGTAACAGATGTTAATCAGAGGGTGTTTAGTGTTTACATAAACAACCAAACAGCTGAGGAAAATTTGGATTTAGTTGCTTTGAGTGGCGAACCTGTTAGTCCTTTGTATAGAGACTATGTTGTAATGGTTAATTTGGAAAATCAGAGAAGGAAAGTTTACATGTTGATCTCACTTCATCCCAATTTGGAGTCAAAACCAAAGTATCATGATGCTATATTGAATGGAGTTGAGATTATCAAGTTAAGTGATAGTAACTATAATCTTGCTCCAAGTTTCCAATTAAAGAATGGACTTCAAAAGGAGAAAAAACTTCCAATTTTTGTTGTTGTTGGGGCTAGTACTTTCTGTATCATTTTGATACTTTTCATAACATTTTTCATTGTTAGGAGAAAAGCGTGGACAAAAATAAAAATTGTAATTTTTCATATACTTAAACTGAATTCACCTTCCAGAAGTGAAGAAAAGATTCAAGGAAAAGTGATATCAGGTAATTGTTATCAATTCACTTTAGAAGAGATCACTTCAGCAACAAATGATTTCAATGAAGATCTTGTGATTGGAGAAGGAGGTTTTGGAAAAGTATACAAAGGAACCATCATGCTTGATGGAGTAGTTATTGATGTGGCCATAAAGCGCGCTAAGCTGAATTCGCGACAAGGATTTAAGGAATTTCAAAATGAGATCAATTTTCATTCGTTTTATCACATGAATTTAGTGTCACTGTTGGGATTCTGTCAAGAGAGTAATGAACTGATACTTGTGTATGAATACATGGCTGAAGGTTCACTTTGTGATCATTTATACAAGAAACAGAAGCAACCGTTATCATGGAATCAAAGACTGGAGATTTGTGTTGGTGCAGCTAGAGGAATCCATTACCTTCATACAGGTAGAACAACTGCGGTGATTCACCGCGATATCAAGTCCGCGAACATATTATTAGATCAGAATTTGGTACCAAAGATTGCAGATTTTGGATTGTCTAGAGTGGTTCCTTCAATTTACCACACTCATGTTAGCACTGAGGTTAAAGGTACTTTTGGATATTTGGATCCTGAGTACTACAAAAGAAGAAAATTGAGTGAAAAATCGGATGTTTATGCATTTGGGGTGGTTTTGTTTGAAGTGTTGAGTGGAAGGGCAGCAGTGAATCCTGAGGCAGTGGAAGAGGACAATGAGAAAGTTGGTTTGGTAGAATGGGCTATGCATTGTTATCAATGTGGAACTATTGATAGATTGGTTGATTCATATTTACAAGGAAATATAAGGTTGGAATGTTTAATGGCATTTGTGGAGATTGGCATTCAGTGCTTTGCTAACAAGAGTGCAGAAAGGCCAAGTATGGGAGAGGTTCTCAGTAATTTAGAGAGAATTATGTCCTCACCGGAACATTTGGAGAGGCAGGAATTCCAAACTGTTGACATGAGTTCATAG 2481 0.3615 MKETRRLESSRFLTIFIPHLLLFIFFLVHLTSCDDSLNIPPSDKVLLNCGSSGSSTFNGLNWIGDIGTNFFQTSYDTTSSATLLRSNSNKVAPKIPYLTARIIHHSPFTYSFPFSSPGLKFIRLYFLSTSYLPIYSSNTKSYFSVKSGPYTLVNNFNPLLAAQEINSSYVTKDFFVNIKQKSLNITFTPSPLIHKAYAFVNGIETFSVPNNLFSHASNSNVSVPYLGHKEPIFINNEYAFEKLYMVNIGTGSYYQVVNAFGSWLDGIDFISGSQYGTVLIVREDGIDMNESLLNSNDINYSAPLEVYLTARTMGSNGDSNMRYNLTWSFFVDSGFRYLVRLHFCELSMLVTDVNQRVFSVYINNQTAEENLDLVALSGEPVSPLYRDYVVMVNLENQRRKVYMLISLHPNLESKPKYHDAILNGVEIIKLSDSNYNLAPSFQLKNGLQKEKKLPIFVVVGASTFCIILILFITFFIVRRKAWTKIKIVIFHILKLNSPSRSEEKIQGKVISGNCYQFTLEEITSATNDFNEDLVIGEGGFGKVYKGTIMLDGVVIDVAIKRAKLNSRQGFKEFQNEINFHSFYHMNLVSLLGFCQESNELILVYEYMAEGSLCDHLYKKQKQPLSWNQRLEICVGAARGIHYLHTGRTTAVIHRDIKSANILLDQNLVPKIADFGLSRVVPSIYHTHVSTEVKGTFGYLDPEYYKRRKLSEKSDVYAFGVVLFEVLSGRAAVNPEAVEEDNEKVGLVEWAMHCYQCGTIDRLVDSYLQGNIRLECLMAFVEIGIQCFANKSAERPSMGEVLSNLERIMSSPEHLERQEFQTVDMSS 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01000 826 SUPERFAMILY Protein kinase-like (PK-like) 507 804 IPR011009 -
Vivi2g01000 826 Pfam Malectin-like domain 47 429 IPR024788 -
Vivi2g01000 826 Gene3D Transferase(Phosphotransferase) domain 1 607 825 - -
Vivi2g01000 826 FunFam FERONIA receptor-like kinase 238 431 - -
Vivi2g01000 826 ProSitePatterns Protein kinases ATP-binding region signature. 535 560 IPR017441 GO:0005524
Vivi2g01000 826 CDD STKc_IRAK 535 807 - -
Vivi2g01000 826 FunFam FERONIA receptor-like kinase 44 209 - -
Vivi2g01000 826 FunFam Receptor-like protein kinase FERONIA 607 825 - -
Vivi2g01000 826 SMART serkin_6 529 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g01000 826 FunFam receptor-like protein kinase FERONIA 494 606 - -
Vivi2g01000 826 Gene3D Phosphorylase Kinase; domain 1 492 606 - -
Vivi2g01000 826 PANTHER OS03G0124300 PROTEIN-RELATED 15 480 IPR046957 GO:0004672
Vivi2g01000 826 Pfam Protein tyrosine and serine/threonine kinase 534 804 IPR001245 GO:0004672|GO:0006468
Vivi2g01000 826 Gene3D - 240 431 - -
Vivi2g01000 826 Gene3D - 45 208 - -
Vivi2g01000 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 651 663 IPR008271 GO:0004672|GO:0006468
Vivi2g01000 826 ProSiteProfiles Protein kinase domain profile. 529 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01000 Vivi-Chr2 38796721 38800296 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01000 41 816 Receptor kinase-like Gene Family AT3G51550 41.852 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vivi2g01000 Malectin_like 2.2e-28 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01000 - - vvo:131646089 1617.44