Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00985 ATGAAAGCAGGAAAAGTGAACCAAGAAGACGACGAGTACGATGAGGAAGAGTTCAATTCTTCTAAAAAACTAGGCACTTCCTCCTCTGCCCCTAACTCCAATAAAGATGGAAAAGCTACTGATAAGGCTAGTGTAATAAGATCGAAACATTCTGTAACCGAGCAGCGTAGAAGAAGCAAGATAAATGAGAGATTCCAAATATTGAGGGATCTCATACCTCAATGTGATCAAAAGAGGGACACAGCGTCATTCTTATTAGAGGTGATCGAGTATGTTCAGTACTTACAGGAGAAGGTACAAAAATATGAGGGATCGTATCAAGGTTGGAGTCAAGAGCCGTCGAAGTTGATGCCTTGGAGAAATAGCCATTGGCGTGTACAAAACTTTGTTGGTCAACCTGCATCTGTAAAGAATGGTTCAGGTCCGGCTTTGCCATTTCCCGGAAAGTTTGACGAAAGCAACATTAGTATCTCTCCAACTATGCTTAGTGGTGCTCAGACTATGATGGATCATGATCTGAGTCGGGATATTGTCGGAAAAACAGTAGAGAGGCAACCTGATTTAGCAAGCAAGGGAATTTCTCTGCCCGCACCTATGCATGCAAACATGTCTGTCCCTGTCAGAAGTGATGGTGTATTTTCCCATCCTCTTCATGGAACTGTTTCTGATGCACAATCAACTGAGTGTCCTGCAATTAGTGAACACCTGAACCCGCAGGATGAACTTACAATTGAAGGAGGGACAGTCAGCATCTCGAGTGTATACTCCCAAGAGTTGCTGAACAATCTAACTCAGGCACTACAAAGTGCCGGGCTAGATCTCTCGAAGGCTAACATTTCGGTGCAAATTGATCTTGGGAAGCGTGCAAACAAAGAGCCAAGTGGCGCAACCTCTTCTCCGAAGGATCATGATAACCCTCTTTCTGGCAATCAAAACATTGCTCATTTTAGAGATGTTGACATTAGAGAGGATTCAATTCAAGCTCAGAAAAGAATGAAAACATTCAAGTGA 1011 0.4313 MKAGKVNQEDDEYDEEEFNSSKKLGTSSSAPNSNKDGKATDKASVIRSKHSVTEQRRRSKINERFQILRDLIPQCDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWSQEPSKLMPWRNSHWRVQNFVGQPASVKNGSGPALPFPGKFDESNISISPTMLSGAQTMMDHDLSRDIVGKTVERQPDLASKGISLPAPMHANMSVPVRSDGVFSHPLHGTVSDAQSTECPAISEHLNPQDELTIEGGTVSISSVYSQELLNNLTQALQSAGLDLSKANISVQIDLGKRANKEPSGATSSPKDHDNPLSGNQNIAHFRDVDIREDSIQAQKRMKTFK 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00985 336 MobiDBLite consensus disorder prediction 40 58 - -
Vivi2g00985 336 MobiDBLite consensus disorder prediction 292 312 - -
Vivi2g00985 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 117 IPR036638 GO:0046983
Vivi2g00985 336 MobiDBLite consensus disorder prediction 22 39 - -
Vivi2g00985 336 Gene3D - 39 116 IPR036638 GO:0046983
Vivi2g00985 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 95 IPR011598 GO:0046983
Vivi2g00985 336 MobiDBLite consensus disorder prediction 316 330 - -
Vivi2g00985 336 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 7 334 IPR044295 GO:0003700|GO:0006351|GO:0046983
Vivi2g00985 336 MobiDBLite consensus disorder prediction 1 58 - -
Vivi2g00985 336 Pfam Helix-loop-helix DNA-binding domain 47 96 IPR011598 GO:0046983
Vivi2g00985 336 FunFam BHLH domain class transcription factor 43 115 - -
Vivi2g00985 336 SMART finulus 51 101 IPR011598 GO:0046983
Vivi2g00985 336 MobiDBLite consensus disorder prediction 286 336 - -
Vivi2g00985 336 CDD bHLH_AtBIM_like 44 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00985 Vivi-Chr2 36623797 36627079 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00985 1 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 54.030 7.52e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g00985 HLH 2.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00985 - - gmx:100816055 523.472