Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00984 ATGGAGCAACAAGGACATCAAAGACATAGAATCATAAATGGTTCACATGTTTACTATGGAGATGTAATTGGACCATTTGTACCATGGAATGTTATTAGCAATGTTAACTATCAAATGATGAGTGTTCCTTATGGGTCTCATGGTGGAAATCAACTTAGGAGGAGTATCCCACAAATATATGCTCATGTTGAAGATGGACACTTTATTCTCAATGATCAAGTCAACCATGTTTCAACAAGAAGATTCATTGAACCTCATACACCATATCATACCAATCTTGGAAGAAACCAACCTAGGGTGAGTACACAAGATGTCTTGCCGGCTAATGCTTATGTTCAAGATGGTCACTTGATTCTTCAACAAAACAACATAAACCAAGCTTTATTAAGAAGAGACATTAAAGCTACTCAAACACGTTCTGTTACAAATCTTAAGAGAATTACAATTGAAGATGGAACGACAAATTCTGAACATATCACATGTTCCATTTGTCTTATGGAACTTTCAAGTAGTTCAATCGCTATTCAATTGCCTAGTCCTTGCTCACATGTGTATCACGAAGATTGTATTATGAGGTGGTTTGATAGATCTAGGACATGCCCTTTGTGTCGTAGGTCTGTTTTGTGA 627 0.3652 MEQQGHQRHRIINGSHVYYGDVIGPFVPWNVISNVNYQMMSVPYGSHGGNQLRRSIPQIYAHVEDGHFILNDQVNHVSTRRFIEPHTPYHTNLGRNQPRVSTQDVLPANAYVQDGHLILQQNNINQALLRRDIKATQTRSVTNLKRITIEDGTTNSEHITCSICLMELSSSSIAIQLPSPCSHVYHEDCIMRWFDRSRTCPLCRRSVL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00984 208 SUPERFAMILY RING/U-box 160 207 - -
Vivi2g00984 208 ProSiteProfiles Zinc finger RING-type profile. 161 204 IPR001841 -
Vivi2g00984 208 SMART ringv_2 160 204 IPR011016 GO:0008270
Vivi2g00984 208 SMART ring_2 161 203 IPR001841 -
Vivi2g00984 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 208 IPR013083 -
Vivi2g00984 208 Pfam Ring finger domain 160 204 IPR001841 -
Vivi2g00984 208 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 122 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00984 Vivi-Chr2 36609611 36610237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00984 150 204 C3H Transcription Factor Family AT5G54990 47.273 4.70e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00984 - - vvo:131648854 436.417