Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00941 ATGATTTCAAAAACAAGAACCTCTATCATTAATGTTGTTATTATCATAGCAATTTTATATAAAGCAAATATTGTATTATCAGATGACAATAGTCTAATTCCTGCTGATAGATCCCAAGTAGATTCATGGTTTAATAAGAATGTGGGTCCATTAAAACAAAGAAAAAGTACCCTTGAACCTGCATTGGTGGATGCAGAGGCTGGTGCTAAGGTTATTAAAGTAATGAAAGATGGTAGTGGTCAATTCAAAACCATCACCGATGCCATCAATAGCATACCTACTGGAAACAACAAACGTGTAATTCTTAAGATAGGTCCTGGAAATTATAAGGAGAAAATAACAATTGACAGGTCTAAACCTTTTATTACATTGTTAGGTACACCAAAAAATATGCCTAATTTAACTTTTGATGGTACTGCAAAACAATATGGCACAGTTGATAGTGCAACATTGATTGTTAAATCTGATTATTTTGTAGCTGCTAACATCGCAATATCGAATTCTGCCGCAAGACCTGATGGAAAAAGGTCAGGCGCTCAAGCGGTTGCGTTGAGAATTTCTGGCGACAAAGCAGCATTTTATAACTGCCAAATATATGGATTCCAGGATACAGTTTGCGATGACAGGCATAACCATCTTTTCAAAGATTGCTTAATTCAAGGCACAATAGATTACATATTCGGAAGTGGAAAGTCACTATATTTAAAAACTGAATTAAGAACGCTTGGAACTAAAGATGTGACAGTGATAGTAGCACAAGCAAGAAAAAGTGCATCAGAAGATTATATATACTCATTTGTGCATTGTGATTTAACTGGAACTGGAACTCGCACATTCTTGGGTAGAGCATGGATGTCTCGTCCCAAAGTCGCATTTGCTTACTCATCTATGAGCAATGTTATTGATCCAGAAGGGTGGAGTAACAACATGCACTCTGAATATGACAAAACTATATTCTTTGGAGAATACAAGAACACAGGACCAGGGGCAGCTACCAAAAAACGTGCAAAATTCACAAAGCTATTAAGTGATGCAGAAGCTAAACCTTTCATTACACTTGGAATCATTCAAGGATCTAAATGGCTGCTACCTCCTCCAAATTTTTAA 1107 0.3622 MISKTRTSIINVVIIIAILYKANIVLSDDNSLIPADRSQVDSWFNKNVGPLKQRKSTLEPALVDAEAGAKVIKVMKDGSGQFKTITDAINSIPTGNNKRVILKIGPGNYKEKITIDRSKPFITLLGTPKNMPNLTFDGTAKQYGTVDSATLIVKSDYFVAANIAISNSAARPDGKRSGAQAVALRISGDKAAFYNCQIYGFQDTVCDDRHNHLFKDCLIQGTIDYIFGSGKSLYLKTELRTLGTKDVTVIVAQARKSASEDYIYSFVHCDLTGTGTRTFLGRAWMSRPKVAFAYSSMSNVIDPEGWSNNMHSEYDKTIFFGEYKNTGPGAATKKRAKFTKLLSDAEAKPFITLGIIQGSKWLLPPPNF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00941 368 FunFam Pectinesterase 67 364 - -
Vivi2g00941 368 Gene3D - 67 364 IPR012334 -
Vivi2g00941 368 ProSitePatterns Pectinesterase signature 2. 219 228 IPR033131 -
Vivi2g00941 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 66 362 - -
Vivi2g00941 368 Pfam Pectinesterase 72 358 IPR000070 GO:0030599|GO:0042545
Vivi2g00941 368 SUPERFAMILY Pectin lyase-like 69 362 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00941 Vivi-Chr2 33682570 33684357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00941 11 366 Carbohydrate Esterase AT1G69940 58.101 5.17e-156 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00941 K01051 - gmx:100786427 523.472