Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00924 ATGAGTGACAAAGAAAAGTTTGAGGTAGATAGAAATGAGGATCCTATGAGTTACTCTTCTGGTATGCCTCCTGATTGGAGATTTGGGGGTGGAAATCTTGTGGATTCATCTGCTGGTTTGGTTTCAATTGGTAATTCTATGAGAGGAGATTTAGTTGGTTCTTCTTCATGTTCATCTGCCTCTATGGTGGACTCTTTTAGTCCTAACTTTTGGGACCATTCAGCGAATTCCCAAAATTTGGGATTTTGTGACATGAATGTTCAGCACAATGGGAGCTCTTCGAACGCGGTTGGGATTAGAAAAGATGGGTTTGGTTTTGGAAGAGGTGGTCATGATGAAATAGGTTGGAACCAGACTAATTCTATGTTGAAAGGGGATGGTTTTTTACCAAATGGACAAGGGGTTTTTCCGCAGAATTTATCTCAGTTTCCAGCTGATTCTGGTTTTATTGAAAGGGCTGCGAGGTTCTCTTGCTTCGGTGGAGGGAATTTTGGTGATGTGATGAACTCGTATGGGATTCCTCAATCCATGGCTATGTATGTCGGTGCAGTTCATGGAGGTAGAGATGCTCTTGCGGGAGCTGGATTGAAAATAGCAACCGGGGGACAATCACAAGAAAGAAGTGATCCTAATGTAGTTGAAGCAGCTACCAAAGGCGTGTCTCCATCTGTTGAGCAATTGGCTACTAGAGGAAGCCCTTTATTGAATGATAAAAATGAGAGTCGTGCCTTGTCTCGAGATGAAGAGAAGAAGGCTGTTGTTCGGAATGGTAATGATTCTGACAGAGGTGAGTCGGGCGATGACGGTGGTGGTGGTGGACAGGGTGGTTCCCCAATGTTGGAGGGTACTACTAGTGGGGAGCCTTCTATTAAAGGACTTAACTCGAAGAAAAGAAAAAGAAGTGGACAAGATGATGATAATGATAAAGTTAATGAAGCTCAAGAACTACAGAGTGAAGGAGCAAAGGACAACCCTGTGAATCAACAGAAGGGCGACCAACAACCAACTTCAACCACCAAGGCTTCTGGGAAGAATACCAAACAGGGCTCTCAATCTTCTGATCCACCTAAGGAGGAATACATACATGTTAGGGCTCGCCGGGGTCAAGCAACAAACAGCCATAGCCTTGCAGAAAGAGTTAGGAGGGAAAAGATAAGTGAGAGGATGAAGTTTCTTCAGGAACTTGTGCCTGGATGCAGCAAGGTCACTGGCAAGGCAGTAATGCTGGACGAAATCATCAACTATGTACAGTCACTTCAACGACAAGTTGAGTTTTTATCTATGAAACTTGCAACGGTAAATCCACGGCTGGATTTTAATATTGAAGGCCTTCTTGCTAAAGATATTCTTCACCAAAGGCCCGGTCCTTCATCTGCATTAGGGTTTCCTTTAGAGATGTCGATGAATTTTCCTCCATTACATCAACCTCAACCAGGGCTGATTCAATCAGTTATTCCAAACATGACAAACCCGTCCGATATCCTTCGTAGAGCTATGCATCCACAATTGAGTGGAGGGTTCAAGGAGCCAACTCAGATGCCTGAAATGTGGGAGGATGAGCTTCACAATGTTATACAAATGAGCTTTGCAACAACTGCTCCCACGAGTAACCAAGATGTGGATGGTACTGCTGCATCAAATCAGATGAAAGTTGAACTTTGA 1662 0.4386 MSDKEKFEVDRNEDPMSYSSGMPPDWRFGGGNLVDSSAGLVSIGNSMRGDLVGSSSCSSASMVDSFSPNFWDHSANSQNLGFCDMNVQHNGSSSNAVGIRKDGFGFGRGGHDEIGWNQTNSMLKGDGFLPNGQGVFPQNLSQFPADSGFIERAARFSCFGGGNFGDVMNSYGIPQSMAMYVGAVHGGRDALAGAGLKIATGGQSQERSDPNVVEAATKGVSPSVEQLATRGSPLLNDKNESRALSRDEEKKAVVRNGNDSDRGESGDDGGGGGQGGSPMLEGTTSGEPSIKGLNSKKRKRSGQDDDNDKVNEAQELQSEGAKDNPVNQQKGDQQPTSTTKASGKNTKQGSQSSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILHQRPGPSSALGFPLEMSMNFPPLHQPQPGLIQSVIPNMTNPSDILRRAMHPQLSGGFKEPTQMPEMWEDELHNVIQMSFATTAPTSNQDVDGTAASNQMKVEL 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00924 553 Pfam Helix-loop-helix DNA-binding domain 372 420 IPR011598 GO:0046983
Vivi2g00924 553 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 369 419 IPR011598 GO:0046983
Vivi2g00924 553 MobiDBLite consensus disorder prediction 532 553 - -
Vivi2g00924 553 CDD bHLH_AtBPE_like 359 444 - -
Vivi2g00924 553 Gene3D - 366 439 IPR036638 GO:0046983
Vivi2g00924 553 FunFam Basic helix-loop-helix transcription factor 366 438 - -
Vivi2g00924 553 MobiDBLite consensus disorder prediction 216 357 - -
Vivi2g00924 553 MobiDBLite consensus disorder prediction 222 239 - -
Vivi2g00924 553 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 367 438 IPR036638 GO:0046983
Vivi2g00924 553 MobiDBLite consensus disorder prediction 240 266 - -
Vivi2g00924 553 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 252 479 IPR024097 GO:0006355
Vivi2g00924 553 SMART finulus 375 425 IPR011598 GO:0046983
Vivi2g00924 553 MobiDBLite consensus disorder prediction 292 316 - -
Vivi2g00924 553 MobiDBLite consensus disorder prediction 317 355 - -
Vivi2g00924 553 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00924 Vivi-Chr2 33181255 33185194 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00924 1 552 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 43.310 1.74e-108 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g00924 HLH 6.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00924 - - tpra:123911592 877.47