Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00891 ATGGCAAATGATACTTCAAGTTGTGATTTTCATAATAAACGTCTTGGTCTTTTAAAAGATCAAGTTCATTTGGTGAAAAGGAAAGATTCTAATCGCTATGAGATTGCTGCGATACAAGATCAATTATCATTTGAGAAGGGGTTTTTTATAGTCATTCGTGCATGCCAATTGTTAGCACAAAAGAATGATGGAATAATATTGGTTGGGGTGGCGGGTCCTTCGGGAGCAGGGAAGACTATATTTACTGAAAAGATACTCAATTTCATGCCTAGTGTTGCTGTTATTTCAATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGAAACTTCGATGATCCACGCTTAACTGACTATGACACATTGCTCCAGAATTTACAAGATTTGAAGGAAGGAAAGACTGTCCAGGTTCCGATATATGATTTCAAGTCCAGTTCACGCGTAGGATACAGGACTGTAGAACCCCCGACTTCCAATATTGTGATTATAGAAGGTATCTATGCCTTGAGTGAGAAGTTGCGAACTTTGCTGGACCTTCGAGTTTCTGTTACAGGTGGAGTTCACCTTGACCTTGTAAAGCGAGTTATACGTGACATTCAACGTGCTGGCCAAGAGCCTGAAGAAATTATTCATCAAATATCTGAGACGGTATATCCTATGTACAAGGCTTTCATTGAGCCAGATCTCAAGACGGCGCATATAAAAATCACCAACAAATTTAATCCATTTACTGGATTCCAGAGCCCGACTTACATATTAAAGTCAGCAAAGACTGTAGCAGTTGACCAAATTAAAGCTGTTCTCTCTGAAGATTGTCTGGAAACAACTGAGCAAACTTATGATATATATCTTCTACCTCCTGGTGAAGATCCAGAAACATGCCAATCGTATTTAAGGATGCGAAACAAGGATGGGAAATACAGTCTTATGTTTGAGGAATGGGTGACAGACAATCCCTTTGTCATATCGCCGAGAATTACTTTTGAGGTCAGTGTGCGCCTCCTTGGTGGACTAATGGCCTTGGGATACACGATAGCTACTATCCTTAAGAGAAACAGCCATGTCTTTTCTGATGATAAGGTTTGTGTGAAACTAGATTGGCTTGAGCAACTTAATCGACATTATGTTCAGGTACAAGGGAGAGATCGCTTAGTTTTGAAAGAGATTGGAGATCAGCTGGGTCTCGAAGGTTCCTACATTCCTCGTACATACATTGAGCAAATTCAACTTGAAAGGCTTGTGAATGAGGTTATGGCTCTACCAGAAGATTTGAAGACAAAGCTCAGCCTGGATGAGGATTTGGTTTCAAGCCCCAAAGAAGCACTTTCTAGAGCTTCTGCTGACAGGGTTGCCATGAGAAATGAGAATATGAGAAGTGGATTGTCACAGTCATATACAAGTCAAAGGGACAAAAATGCAGCCAAAGTTAATGGATATTTTACCAACAATCGAGGATTTGGTGAAAGAAATTCAGATTCCTCCACAACACAATTAAATCAGAGAGCCATTAGTCAGCTTTCAGAACAGATTTCCGCCCTCAATGATAGAATGGATGAATTTACAAATCGGATTGAAGAGCTGAATAGCAAGCTGACCATTAGAAATAAGTCTCCAAGCCAACCAAATATGTTAGCTCAAGCCGAAGTCTGCAATGGTTCTGCTCCCACGTCTTACTTCATCAACAGTTTGGGCAATGGTAGCATAACTGGTTATAAGATGCCACATTCCTCGTCTACATCCCAATTAAATAAGGAGTCTCCCTTAATAGATGAGATATCGGGCATTACACGTGGGCAGCGTCAGATCATGCATCAAATGGACAATCTAAATAATCTTCTTCGGGGTGGTATAGGGGAAAGGTCTCAGCAAACAAGAATCAACAACAAGAGCATAGTTACAGATTTGAATTACATTGGAGCGAGTATTGTAGTGGTAGTTGCAGTTGGTTGTTTGGGGATCTTTTTGACCCGAAAGTGA 1977 0.4036 MANDTSSCDFHNKRLGLLKDQVHLVKRKDSNRYEIAAIQDQLSFEKGFFIVIRACQLLAQKNDGIILVGVAGPSGAGKTIFTEKILNFMPSVAVISMDNYNDASRIVDGNFDDPRLTDYDTLLQNLQDLKEGKTVQVPIYDFKSSSRVGYRTVEPPTSNIVIIEGIYALSEKLRTLLDLRVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLKTAHIKITNKFNPFTGFQSPTYILKSAKTVAVDQIKAVLSEDCLETTEQTYDIYLLPPGEDPETCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFEVSVRLLGGLMALGYTIATILKRNSHVFSDDKVCVKLDWLEQLNRHYVQVQGRDRLVLKEIGDQLGLEGSYIPRTYIEQIQLERLVNEVMALPEDLKTKLSLDEDLVSSPKEALSRASADRVAMRNENMRSGLSQSYTSQRDKNAAKVNGYFTNNRGFGERNSDSSTTQLNQRAISQLSEQISALNDRMDEFTNRIEELNSKLTIRNKSPSQPNMLAQAEVCNGSAPTSYFINSLGNGSITGYKMPHSSSTSQLNKESPLIDEISGITRGQRQIMHQMDNLNNLLRGGIGERSQQTRINNKSIVTDLNYIGASIVVVVAVGCLGIFLTRK 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00891 658 Pfam CYTH domain 252 404 IPR023577 -
Vivi2g00891 658 ProSiteProfiles CYTH domain profile. 248 410 IPR023577 -
Vivi2g00891 658 SUPERFAMILY CYTH-like phosphatases 263 407 IPR033469 -
Vivi2g00891 658 Gene3D - 254 412 - -
Vivi2g00891 658 Pfam Phosphoribulokinase / Uridine kinase family 68 236 IPR006083 GO:0005524|GO:0016301
Vivi2g00891 658 PANTHER URIDINE KINASE 38 423 - -
Vivi2g00891 658 Gene3D - 66 248 IPR027417 -
Vivi2g00891 658 PRINTS Uridine kinase signature 224 237 - -
Vivi2g00891 658 PRINTS Uridine kinase signature 65 82 - -
Vivi2g00891 658 PRINTS Uridine kinase signature 132 147 - -
Vivi2g00891 658 PRINTS Uridine kinase signature 188 198 - -
Vivi2g00891 658 CDD UMPK_like 67 239 - -
Vivi2g00891 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 238 IPR027417 -
Vivi2g00891 658 Coils Coil 503 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00891 Vivi-Chr2 29694696 29701316 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00891 66 236 PRT Gene Family AT4G26510 29.444 8.19e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00891 K00876 - gmx:100781286 1087.4