Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00890 ATGGCAAATGATACTTCAAGTTGTGATTTTCATAATAAACGTCTTGGTCTTTTAAAAGATCAAGTTCATTTGGTGAAAAGGAAAGATTCTAATCGCTATGAGATTGCTGCGATACAAGATCAATTATCATTTGAGAAGGGGTTTTTTATAGTCATTCGTGCATGCCAATTGTTAGCACAAAAGAATGATGGAATAATATTGGTTGGGGTGGCGGGTCCTTCGGGAGCAGGGAAGACTATATTTACTGAAAAGATACTCAATTTCATGCCTAGTGTTGCTGTTATTTCAATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGAAACTTCGATGATCCACGCTTAACTGACTATGACACATTGCTCCAGAATTTACAAGATTTGAAGGAAGGAAAGACTGTCCAGGTTCCGATATATGATTTCAAGTCCAGTTCACGCGTAGGATACAGGACTGTAGAACCCCCGACTTCCAATATTGTGATTATAGAAGGTATCTATGCCTTGAGTGAGAAGTTGCGAACTTTGCTGGACCTTCGAGTTTCTGTTACAGGTGGAGTTCACCTTGACCTTGTAAAGCGAGTTATACGTGACATTCAACGTGCTGGCCAAGAGCCTGAAGAAATTATTCATCAAATATCTGAGACGGTATATCCTATGTACAAGGCTTTCATTGAGCCAGATCTCAAGACGGCGCATATAAAAATCACCAACAAATTTAATCCATTTACTGGATTCCAGAGCCCGACTTACATATTAAAGTCAGCAAAGACTGTAGCAGTTGACCAAATTAAAGCTGTTCTCTCTGAAGATTGTCTGGAAACAACTGAGCAAACTTATGATATATATCTTCTACCTCCTGGTGAAGATCCAGAAACATGCCAATCGTATTTAAGGATGCGAAACAAGGATGGGAAATACAGTCTTATGTTTGAGGAATGGGTGACAGACAATCCCTTTGTCATATCGCCGAGAATTACTTTTGAGGTCAGTGTGCGCCTCCTTGGTGGACTAATGGCCTTGGGATACACGATAGCTACTATCCTTAAGAGAAACAGCCATGTCTTTTCTGATGATAAGGTTTGTGTGAAACTAGATTGGCTTGAGCAACTTAATCGACATTATGTTCAGGTACAAGGGAGAGATCGCTTAGTTTTGAAAGAGATTGGAGATCAGCTGGGTCTCGAAGGTTCCTACATTCCTCGTACATACATTGAGCAAATTCAACTTGAAAGGCTTGTGAATGAGGTTATGGCTCTACCAGAAGATTTGAAGACAAAGCTCAGCCTGGATGAGGATTTGGTTTCAAGCCCCAAAGAAGCACTTTCTAGAGCTTCTGCTGACAGGGTTGCCATGAGAAATGAGAATATGAGAAGTGGATTGTCACAGTCATATACAAGTCAAAGGGACAAAAATGCAGCCAAAGTTAATGGATATTTTACCAACAATCGAGGATTTGGTGAAAGAAATTCAGATTCCTCCACAACACAATTAAATCAGCTTTCAGAACAGATTTCCGCCCTCAATGATAGAATGGATGAATTTACAAATCGGATTGAAGAGCTGAATAGCAAGCTGACCATTAGAAATAAGTCTCCAAGCCAACCAAATATGTTAGCTCAAGCCGAAGTCTGCAATGGTTCTGCTCCCACGTCTTACTTCATCAACAGTTTGGGCAATGGTAGCATAACTGGTTATAAGATGCCACATTCCTCGTCTACATCCCAATTAAATAAGGAGTCTCCCTTAATAGATGAGATATCGGGCATTACACGTGGGCAGCGTCAGATCATGCATCAAATGGACAATCTAAATAATCTTCTTCGGGGTGGTATAGGGGAAAGGTCTCAGCAAACAAGAATCAACAACAAGAGCATAGTTACAGATTTGAATTACATTGGAGCGAGTATTGTAGTGGTAGTTGCAGTTGGTTGTTTGGGGATCTTTTTGACCCGAAAGTGA 1962 0.4032 MANDTSSCDFHNKRLGLLKDQVHLVKRKDSNRYEIAAIQDQLSFEKGFFIVIRACQLLAQKNDGIILVGVAGPSGAGKTIFTEKILNFMPSVAVISMDNYNDASRIVDGNFDDPRLTDYDTLLQNLQDLKEGKTVQVPIYDFKSSSRVGYRTVEPPTSNIVIIEGIYALSEKLRTLLDLRVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLKTAHIKITNKFNPFTGFQSPTYILKSAKTVAVDQIKAVLSEDCLETTEQTYDIYLLPPGEDPETCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFEVSVRLLGGLMALGYTIATILKRNSHVFSDDKVCVKLDWLEQLNRHYVQVQGRDRLVLKEIGDQLGLEGSYIPRTYIEQIQLERLVNEVMALPEDLKTKLSLDEDLVSSPKEALSRASADRVAMRNENMRSGLSQSYTSQRDKNAAKVNGYFTNNRGFGERNSDSSTTQLNQLSEQISALNDRMDEFTNRIEELNSKLTIRNKSPSQPNMLAQAEVCNGSAPTSYFINSLGNGSITGYKMPHSSSTSQLNKESPLIDEISGITRGQRQIMHQMDNLNNLLRGGIGERSQQTRINNKSIVTDLNYIGASIVVVVAVGCLGIFLTRK 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00890 653 Pfam CYTH domain 252 404 IPR023577 -
Vivi2g00890 653 ProSiteProfiles CYTH domain profile. 248 410 IPR023577 -
Vivi2g00890 653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 238 IPR027417 -
Vivi2g00890 653 Gene3D - 254 412 - -
Vivi2g00890 653 Pfam Phosphoribulokinase / Uridine kinase family 68 236 IPR006083 GO:0005524|GO:0016301
Vivi2g00890 653 Coils Coil 491 525 - -
Vivi2g00890 653 SUPERFAMILY CYTH-like phosphatases 263 407 IPR033469 -
Vivi2g00890 653 CDD UMPK_like 67 239 - -
Vivi2g00890 653 PRINTS Uridine kinase signature 224 237 - -
Vivi2g00890 653 PRINTS Uridine kinase signature 132 147 - -
Vivi2g00890 653 PRINTS Uridine kinase signature 65 82 - -
Vivi2g00890 653 PRINTS Uridine kinase signature 188 198 - -
Vivi2g00890 653 Gene3D - 66 248 IPR027417 -
Vivi2g00890 653 PANTHER URIDINE KINASE 38 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00890 Vivi-Chr2 29694696 29701317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00890 66 236 PRT Gene Family AT4G26510 29.444 7.19e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00890 K00876 - gmx:100797542 1077.77