Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00886 ATGAAGATCATCGCGGCATATTTGTTGGCCGTTTTGGGAGGTAACACAGCCCCTTCCGCCACTGATGTCAAGCGCATCCTAAGCTCAGTTGGAGTTGAGGGTGAGGATGAGCAGATTGAGTTGCTCTTGAGCGAAGTCAAGGGAAAAGATTTCGCTGAGCTAATTGCCAGCGGAAGAGAGAAATTGGCTTCAGTTCCTTCTGGTGGAGGAGCTGTGGCTGTTTCTGCTGCATCTGGTGGCGGTGCTGGTGCTGCTGCACCGGCTGCAGAAGCAAAGGAAGAAAAGAAGGTCGAAGAAAAGGAAGAGTCTGATGATGATATGGGCTTCAGTTTGTTTGACTAG 342 0.5029 MKIIAAYLLAVLGGNTAPSATDVKRILSSVGVEGEDEQIELLLSEVKGKDFAELIASGREKLASVPSGGGAVAVSAASGGGAGAAAPAAEAKEEKKVEEKEESDDDMGFSLFD 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00886 113 CDD Ribosomal_P2 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vivi2g00886 113 MobiDBLite consensus disorder prediction 77 113 - -
Vivi2g00886 113 MobiDBLite consensus disorder prediction 89 103 - -
Vivi2g00886 113 Gene3D - 1 59 IPR038716 -
Vivi2g00886 113 Hamap 50S ribosomal protein L12 [rpl12]. 2 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vivi2g00886 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vivi2g00886 113 Pfam 60s Acidic ribosomal protein 18 112 - -
Vivi2g00886 113 FunFam 60S acidic ribosomal protein P2 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00886 Vivi-Chr2 29437408 29438372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00886 1 70 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 74.286 3.44e-31 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00886 K02943 - aof:109825870 124.02