LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g00875	ATGGAAGGAAAAAAAGATGCAGTTTTGTTTTGTGTTTTGGCTTTGTTCTTCATGTGGACTTCTTCAGTAACTGGTTTGCTTTCTTCTAAAGGTGTCAACTATGAAGTTCAAGCTTTGATCGGAATTAAGAACTCTTTGATGGATCCTCATTCAGCTTTAAATAATTGGGATTCTGAGTCTGTTGATCCTTGCAACTGGGCTATGGTTACTTGTTCTCCTGATCATTTCGTCATTGCGCTTGGAATTCCAAGCCAGAATATATCTGGTACTCTCTCATCAACCATCGGTTCCTTACCGAATCTTCAAACGGTGCTTTTGCAGGATAATAATATAACAGGACCGATTCCCTCTGAGATCGGAAGGCTTCAAAAGCTCCAAACACTTGATCTTTCCGACAATTTCTTCACCGGTCAACTTCCGGATTCTCTTTCACATATGAAGGGTCTCCATTACTTGAGGCTAAACAATAACAGTCTTTCTGGACCAATTCCTTCTTCAGTGGCTAACATGTCTCAGCTAGTTTTTCTGGATCTTTCTTTTAATAACTTGAGTGGACCTGTACCTAGGTTAAATGCTAAAACATTCAATATTGTGGGAAATCACCAGATATGTGTCACTGGAGTTGAGCAAAACTGTTTTAGAACAACATTAATTCCTTCTGCTATGAATAATAACTCTCAAGATTTACAAGCTTCTAATAGACCAAAAAGTCACAAAGTTGCTTTGGCTTTTGCCTCAAGCCTAAGCTGCATCTGCTTACTAATTCTGGGATTTGGCTTCCTTCTCTGGTGGAGACAAAGATATAACAAACAAATATTCTTTGACACGAACGAACAATATCGCGAGGACATTTGCCTTGGAAACCTGAAGAAGTTCCATTTCAGAGAACTTCAGGTTGCTACAAATAACTTCAGCAGCAAGAACTTAGTTGGAAAAGGTGGTTTTGGAAATGTTTACAAAGGTTGTCTCCGAGACGGTACAGTTATAGCTGTAAAAAGGCTTAAAGATGGTAATGCAATTGGTGGTGAAATCCAGTTCCAAACTGAACTAGAAATGATCAGCTTAGCTGTTCATCGAAACCTTCTTCGCCTATATGGATTTTGTATGACAACTACCGAAAGGCTCTTGGTTTATCCTTATATGTCAAATGGTAGCGTAGCTTCTCGTCTCAAAGGCAAGCCATCTTTGGAGTGGGGTACAAGGAAGAGGATAGCATTAGGAGCAGGAAGAGGGTTGCTATATTTACATGAACAGTGTGATCCGAAGATTATTCACAGAGATGTTAAAGCAGCAAATATCTTGCTTGATGATTATTGTGAAGCTGTAGTAGGAGACTTTGGGTTGGCAAAGCTGTTGGACCACAGAGATTCACATGTGACAACAGCAGTGAGAGGAACTGTAGGACACATAGCCCCTGAGTACCTATCAACAGGACAATCCTCAGAGAAAACAGATGTATTTGGGTTTGGAATTCTTCTGCTTGAATTGATTTCTGGACAGAGAGCTCTTGAATTTGGAAAAGCTGCAAATCAGAAAGGAGCTATGCTTGATTGGGTGAAGAAAATACATCAAGAGAAGAAGATTGACGTGTTAGTCGACAAGGACTTGAAAAACAACTATGACAGGATAGAGCTAGATGAAATAGTTCAAGTTGCTCTTCTATGTACTCAGTATCTTCCAAGCCACAGACCAAAAATGTCGGAAGTAGTTAGAATGCTTGAAGGAGATGGACTTGCGGAGAAATGGGAAGCTTCACAGAGAGCTGAATCAACAAGAAGTAGAGGAAATGAACTCTCGTCTTCAGAGCGTTATTCTGATCTTACCGATGATTCTTCATTGCTTGCACAAGCAATGGAACTTTCTGGACCAAGATAA	1875	0.4	MEGKKDAVLFCVLALFFMWTSSVTGLLSSKGVNYEVQALIGIKNSLMDPHSALNNWDSESVDPCNWAMVTCSPDHFVIALGIPSQNISGTLSSTIGSLPNLQTVLLQDNNITGPIPSEIGRLQKLQTLDLSDNFFTGQLPDSLSHMKGLHYLRLNNNSLSGPIPSSVANMSQLVFLDLSFNNLSGPVPRLNAKTFNIVGNHQICVTGVEQNCFRTTLIPSAMNNNSQDLQASNRPKSHKVALAFASSLSCICLLILGFGFLLWWRQRYNKQIFFDTNEQYREDICLGNLKKFHFRELQVATNNFSSKNLVGKGGFGNVYKGCLRDGTVIAVKRLKDGNAIGGEIQFQTELEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKGKPSLEWGTRKRIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAMLDWVKKIHQEKKIDVLVDKDLKNNYDRIELDEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAESTRSRGNELSSSERYSDLTDDSSLLAQAMELSGPR	624

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g00875	624	ProSitePatterns	Protein kinases ATP-binding region signature.	310	332	IPR017441	GO:0005524
	Vivi2g00875	624	Gene3D	Phosphorylase Kinase; domain 1	273	380	-	-
	Vivi2g00875	624	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	423	435	IPR008271	GO:0004672\|GO:0006468
	Vivi2g00875	624	Gene3D	Ribonuclease Inhibitor	32	214	IPR032675	-
	Vivi2g00875	624	Gene3D	Transferase(Phosphotransferase) domain 1	381	593	-	-
	Vivi2g00875	624	FunFam	Somatic embryogenesis receptor-like kinase 1	381	593	-	-
	Vivi2g00875	624	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	15	584	-	-
	Vivi2g00875	624	FunFam	Somatic embryogenesis receptor kinase 1	273	380	-	-
	Vivi2g00875	624	Pfam	Leucine rich repeat N-terminal domain	33	72	IPR013210	-
	Vivi2g00875	624	MobiDBLite	consensus disorder prediction	591	615	-	-
	Vivi2g00875	624	ProSiteProfiles	Protein kinase domain profile.	304	559	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g00875	624	SUPERFAMILY	L domain-like	34	197	-	-
	Vivi2g00875	624	Pfam	Leucine rich repeat	124	183	IPR001611	GO:0005515
	Vivi2g00875	624	SMART	serkin_6	304	559	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g00875	624	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	32	214	-	-
	Vivi2g00875	624	MobiDBLite	consensus disorder prediction	581	624	-	-
	Vivi2g00875	624	Pfam	Protein kinase domain	305	571	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g00875	624	SUPERFAMILY	Protein kinase-like (PK-like)	284	574	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g00875	Vivi-Chr2	28857298	28860914	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g00875	9	624	Receptor kinase-like Gene Family	AT5G16000	72.115	0.0	926

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Vivi2g00875		Pkinase	1.5e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g00875	-		-	gmx:100804283	1096.65