Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi2g00856 | ATGCAACCTTACTCATTCTCCTACACATGTGACACTGTTGACGAGTCCTCCATTTCACTCTCACTTGGCCCTCCTGGTACTCACCACAAACCCAAACTATTCTCCACAACAAATCACTCACCTCCTACTACTCTTCATCATAATCATCACCAAAACCAAAACCAAAACCTTAACACTGATGGTGATGACCAGAATGGTGTAACTGTTGCACTTCACATTGGCCTTCCAACCACCATATCACAAAACAACACAACTATTACCAAACCAGATCATCATCATCACTTGCCTTCACCGCCGATTCAAGGTCAATATTGGATCCCTTCTCCTGCTCAAATCCTCATTGGACCAACACAGTTCTCTTGCACAGTCTGCAATAAAATGTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGGTCACAATATAGGAAAGGACCAGAATCTCTAAGGGGAGTAAAACCAGCTTCATCCATGTTGAGGCTTCCGTGTTATTGCTGTGCAGAGGGATGCAAAAACAATATAGAGCATCCAAGGTCAAGACCACTGAAGGATTTCCGGACACTTCAGACACACTACAAGAGGAAACATGGGGCTAAGCCATTTGGGTGTAGAAAGTGTGGGAAGCCCTTTGCAGTGAGAGGAGATTGGAGAACACATGAGAAAAACTGTGGAAAACTTTGGTTCTGCATCTGTGGATCTGATTTCAAACACAAGAGATCACTCAAAGATCATGTTCGTGCTTTCGGCGATGGCCACGCTCCACACACCGTCCAGAGTTGTGAAGATCAGGAAGTTTTGTTAGGTGATGAATATGATGATGATTTTGAAGGAGATGAAAATGATGAAGATGATGATGATAATATTGATAACATGGATGGAATGATTTTTGGTTTTAATTAA | 909 | 0.4257 | MQPYSFSYTCDTVDESSISLSLGPPGTHHKPKLFSTTNHSPPTTLHHNHHQNQNQNLNTDGDDQNGVTVALHIGLPTTISQNNTTITKPDHHHHLPSPPIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGVKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQSCEDQEVLLGDEYDDDFEGDENDEDDDDNIDNMDGMIFGFN | 302 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi2g00856 | 302 | Gene3D | Classic Zinc Finger | 161 | 251 | - | - | |
Vivi2g00856 | 302 | PANTHER | ZINC FINGER PROTEIN WIP2 | 36 | 268 | IPR043584 | GO:0003700|GO:0010468 | |
Vivi2g00856 | 302 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 119 | 146 | IPR013087 | - | |
Vivi2g00856 | 302 | MobiDBLite | consensus disorder prediction | 19 | 65 | - | - | |
Vivi2g00856 | 302 | SUPERFAMILY | beta-beta-alpha zinc fingers | 96 | 140 | IPR036236 | - | |
Vivi2g00856 | 302 | MobiDBLite | consensus disorder prediction | 31 | 65 | - | - | |
Vivi2g00856 | 302 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 121 | 141 | IPR013087 | - | |
Vivi2g00856 | 302 | SUPERFAMILY | beta-beta-alpha zinc fingers | 187 | 224 | IPR036236 | - | |
Vivi2g00856 | 302 | FunFam | Zinc finger protein WIP2 | 173 | 255 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi2g00856 | Vivi-Chr2 | 26989186 | 26990854 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi2g00856 | 4 | 271 | C2H2 Transcription Factor Family | AT1G13290 | 66.914 | 2.63e-119 | 343 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vivi2g00856 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi2g00856 | - | - | aprc:113870355 | 435.647 |