Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00856 ATGCAACCTTACTCATTCTCCTACACATGTGACACTGTTGACGAGTCCTCCATTTCACTCTCACTTGGCCCTCCTGGTACTCACCACAAACCCAAACTATTCTCCACAACAAATCACTCACCTCCTACTACTCTTCATCATAATCATCACCAAAACCAAAACCAAAACCTTAACACTGATGGTGATGACCAGAATGGTGTAACTGTTGCACTTCACATTGGCCTTCCAACCACCATATCACAAAACAACACAACTATTACCAAACCAGATCATCATCATCACTTGCCTTCACCGCCGATTCAAGGTCAATATTGGATCCCTTCTCCTGCTCAAATCCTCATTGGACCAACACAGTTCTCTTGCACAGTCTGCAATAAAATGTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGGTCACAATATAGGAAAGGACCAGAATCTCTAAGGGGAGTAAAACCAGCTTCATCCATGTTGAGGCTTCCGTGTTATTGCTGTGCAGAGGGATGCAAAAACAATATAGAGCATCCAAGGTCAAGACCACTGAAGGATTTCCGGACACTTCAGACACACTACAAGAGGAAACATGGGGCTAAGCCATTTGGGTGTAGAAAGTGTGGGAAGCCCTTTGCAGTGAGAGGAGATTGGAGAACACATGAGAAAAACTGTGGAAAACTTTGGTTCTGCATCTGTGGATCTGATTTCAAACACAAGAGATCACTCAAAGATCATGTTCGTGCTTTCGGCGATGGCCACGCTCCACACACCGTCCAGAGTTGTGAAGATCAGGAAGTTTTGTTAGGTGATGAATATGATGATGATTTTGAAGGAGATGAAAATGATGAAGATGATGATGATAATATTGATAACATGGATGGAATGATTTTTGGTTTTAATTAA 909 0.4257 MQPYSFSYTCDTVDESSISLSLGPPGTHHKPKLFSTTNHSPPTTLHHNHHQNQNQNLNTDGDDQNGVTVALHIGLPTTISQNNTTITKPDHHHHLPSPPIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGVKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQSCEDQEVLLGDEYDDDFEGDENDEDDDDNIDNMDGMIFGFN 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00856 302 Gene3D Classic Zinc Finger 161 251 - -
Vivi2g00856 302 PANTHER ZINC FINGER PROTEIN WIP2 36 268 IPR043584 GO:0003700|GO:0010468
Vivi2g00856 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Vivi2g00856 302 MobiDBLite consensus disorder prediction 19 65 - -
Vivi2g00856 302 SUPERFAMILY beta-beta-alpha zinc fingers 96 140 IPR036236 -
Vivi2g00856 302 MobiDBLite consensus disorder prediction 31 65 - -
Vivi2g00856 302 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Vivi2g00856 302 SUPERFAMILY beta-beta-alpha zinc fingers 187 224 IPR036236 -
Vivi2g00856 302 FunFam Zinc finger protein WIP2 173 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00856 Vivi-Chr2 26989186 26990854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00856 4 271 C2H2 Transcription Factor Family AT1G13290 66.914 2.63e-119 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g00856 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00856 - - aprc:113870355 435.647