Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00847 ATGGCAACAACATTGAAAAAAATAGTGGGAGTACTTTTGAATTTGGAAGATATTGGAGGGAAAGTGTGGCGGTTTCGATACTCTTATTGGAACAGTAGCCAAAGCTACGTTCTGACGAAAGGTTGGAGCCGGTTTGTTAAAGAGAAAAATCTGAAAGCCGGTGATACGGTTTGTTTTCAACGCTCTACTGGACCGGATAAGCAGCTCTTTATCGACTGGAAAGTAAGAAAGAATGTTGTTAATGAGGTTGGACAGGTTGTTGAGCCGGTTCAGATGGTTCGGCTATTTGGAGTTAATATTTTCAAACTCCCTGGATCCGATGGGAATAGTAATGTGAATGGTTTCTGCAATGGGAAGAGGAGAGAGATGGAAATGTTTACTTTTGACTCTTGCAAGAAGCCTAAAATTATTGGAGCTTTGTAA 423 0.4066 MATTLKKIVGVLLNLEDIGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFQRSTGPDKQLFIDWKVRKNVVNEVGQVVEPVQMVRLFGVNIFKLPGSDGNSNVNGFCNGKRREMEMFTFDSCKKPKIIGAL 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00847 140 CDD B3_DNA 15 62 IPR003340 GO:0003677
Vivi2g00847 140 SMART B3_2 1 77 IPR003340 GO:0003677
Vivi2g00847 140 Gene3D - 3 85 IPR015300 -
Vivi2g00847 140 ProSiteProfiles B3 DNA-binding domain profile. 1 76 IPR003340 GO:0003677
Vivi2g00847 140 SUPERFAMILY DNA-binding pseudobarrel domain 8 71 IPR015300 -
Vivi2g00847 140 Pfam B3 DNA binding domain 10 73 IPR003340 GO:0003677
Vivi2g00847 140 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 10 110 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00847 Vivi-Chr2 26573384 26574425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00847 10 140 B3 DNA Binding Superfamily AT1G25560 61.940 2.87e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi2g00847 B3 4.2e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00847 K09287 - vvo:131648746 278.1