Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00837 ATGGCCACCGTTGTAACCAGAGGACTTGGAGTCACAAAGCTCCATGACCCCTACCACCACAATCCCAACCTTAAATCTCTCTTTCTTGGCCAATCACTCAGAATCAAACCCTCCATTAACAATCAACAACCACCATGCAGTGTGAAATTCTCAACCCCAAAGGCGTTTCATGGGGGTGATGAATGGCTTCACTCAGTTCACAGCCTTTTTGTTGGTGTTGGGGTTGGACTTCCATGCACTGTCATGGAGTGTGGGGACATGATTTACAGAAGCACTCTTCCTAAGCCTACTGGCTTGACACTTACTATCCCTGGTCTTGTTCTTGCTTTTGGTGCTCTCTCTTATCTTTGGGCTACACCTGGTGTTGCTCCTGGTTTCTTTGATATGTTTGTGCTTGCTTTTGTTGAAAGGTTCTTTAGACCCACTTTCAGAAAGGATGATTTTATTCTAGGCAAGAAGCTGGGGGAGGGATCATTTGGAGTTGTTTATAGAGTCACTCTAGCTAACAAACCCTCTTCAAAGGAAGGTGACTTAGTCTTGAAGAAAGCCACTGAATATGGTGCTGTAGAAATTTGGATGAATGAGAGAGTACGGAGAGCTTGTGCAAGCAGCTGTGCAGATTTCGTTTATGGTTTTCTTGAGAGGTCTACAAAGAAGACTCCTGAATATTGGCTTATATGGCAGTTTGAAGGGGAATCCACCTTAGCTGATCTATTGCAGAGTAGAGATTTTCCTTACAATGTTGAAACATTGATTCTTGGCGAGGTACAAGATTTGCCCAAGGGATTGGAAAGAGAAAATAGGATTATTCAAACAATCATAGGACAACTCTTGTTTGCATTAGATGGTCTTCACTCAACTGGTATTGTGCACAGGGATATTAAGCCGCAGAACATTATTTTCTCCGAAGGGTCTCGTACATTCAAAATAATTGATCTTGGAGCTGCTACTGATTTGCGAGTTGGCATTAACTACATTCCTAAGGAGTTTCTTTTGGATCCAAGGTATGCTGCACCAGAGCAGTACATTATGAGCACACAAACTCCATCTGCACCCTCTGCTCCAGTTGCTACTGCACTCTCTCCAGTCTTATGGCAGTTAAATCTTCCTGACAGATTCGATATCTACAGTACCGGTCTAATATTTCTCCAAATGGCATTTCCCGGTTTACGCACTGATAATAGCCTCATACAATTCAACCGTCAATTAAAGAGGTGTGACTATGACTTGGTGGCATGGAGAAAAACTGTGGAGCCTCGATGTGGTGCTGAACTTAGGAGGGGGTTTGAGCTGTTGGATTTAGATGGTGGAATAGGATGGGAGCTTCTAACATCAATGGTTCGATACAAAGCAAGGCAAAGACTGAGTGCAAAAGCGGCGTTAGCTCATCCTTACTTTGACAAAGAAGGTTTGTTGGCGTTATCTTTTATGCAAAATTTGAGGCTGCGGCTCTTTCGAGCAACACAGCAGGATTATGGAGAAGCGGCCAAGTGGATTATTCAACTTATGGCAAGATCAGGAACACAAAAGGATGGTGGATTCACGGAAGCTCAGCTCCAGGAACTTAGAGAAATTGTGCCCAAGAAAAAAGCTGGTGCAAAGAGAAATGCTCTAGCTTCAGCTCTAAAAGTACAGAGGAAAATTATAAAAACCTTAAATGAGAGTATGGATGAGCTCAGCAGAAACAGGAAAAGCATTTGGTGGAGGAGATGGATCCCAAGAGAGGAATGA 1731 0.4327 MATVVTRGLGVTKLHDPYHHNPNLKSLFLGQSLRIKPSINNQQPPCSVKFSTPKAFHGGDEWLHSVHSLFVGVGVGLPCTVMECGDMIYRSTLPKPTGLTLTIPGLVLAFGALSYLWATPGVAPGFFDMFVLAFVERFFRPTFRKDDFILGKKLGEGSFGVVYRVTLANKPSSKEGDLVLKKATEYGAVEIWMNERVRRACASSCADFVYGFLERSTKKTPEYWLIWQFEGESTLADLLQSRDFPYNVETLILGEVQDLPKGLERENRIIQTIIGQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSTGLIFLQMAFPGLRTDNSLIQFNRQLKRCDYDLVAWRKTVEPRCGAELRRGFELLDLDGGIGWELLTSMVRYKARQRLSAKAALAHPYFDKEGLLALSFMQNLRLRLFRATQQDYGEAAKWIIQLMARSGTQKDGGFTEAQLQELREIVPKKKAGAKRNALASALKVQRKIIKTLNESMDELSRNRKSIWWRRWIPREE 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00837 576 Coils Coil 542 562 - -
Vivi2g00837 576 SUPERFAMILY Protein kinase-like (PK-like) 132 468 IPR011009 -
Vivi2g00837 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
Vivi2g00837 576 SMART serkin_6 148 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g00837 576 CDD STKc_SNT7_plant 152 466 - -
Vivi2g00837 576 Pfam Protein kinase domain 151 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g00837 576 ProSiteProfiles Protein kinase domain profile. 148 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g00837 576 FunFam Serine/threonine-protein kinase STN7, chloroplastic 257 471 - -
Vivi2g00837 576 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 46 551 - -
Vivi2g00837 576 Gene3D Phosphorylase Kinase; domain 1 136 229 - -
Vivi2g00837 576 Gene3D Transferase(Phosphotransferase) domain 1 257 471 - -
Vivi2g00837 576 ProSitePatterns Protein kinases ATP-binding region signature. 154 181 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00837 Vivi-Chr2 25857764 25861300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00837 266 467 Core Cell Cycle Gene Families AT2G38620 30.986 4.68e-16 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Vivi2g00837 Pkinase 3.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00837 - - gmx:100778588 944.11