Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00836 ATGGCTGGACCATCATGGCTGGTGGACAAAAGTAGAATTGCAACCAAAATAAAGAGTGCAATGGGGTCATGTGCTCCAGAAAATGTTACATGGAAAAGCAATCCTACCAAGACTTGTCCTAATTGTCAGCATGCTATTGACAATAATGATGTTGCGAAAGAGTGGCCAGGCTTGCCAAAAGGTGTGAAATTTGATCCATCTGATCAAGAGATAATATGGCACTTGCTTGCGAAAGTTGGTGTAGAAAATTTGAAACCTCATCCTTTTGTTGATGAGTTTATCACTACTCTTGAAGTGGATGATGGGATTTGTTACACTCACCCTCAAAACTTACCAGGTGTTAAGCAAGATGGAAATGCATCCCACTTCTTCCACAGAGCTATTAAGGCATACAATACTGGCACTCGAAAGCGGCGAAAGATTCACGATCAGGATTGTGGTGATGTCCGCTGGCACAAAACTGGAAGAACTAAACCAGTAATCTTGAATGGGGTTCAAAAAGGTTGTAAAAAGATTATGGTTCTGTATATGAGCAGTGCGGGAGGTGGAAAAGCTGAGAAAACTAATTGGGTTATGCATCAATATCATCTGGGAACGGAAGAGGATGAAAAGGATAGGGAATTTGTCATCTCTAAAGTGTTTTACCAGCAGCAACAAGTCAAATTGGGTGATAAAGATGAACAAGATATTCCTGAAGTCGGTGAAACAACGATTGTAAAAGTGGATCCAGTCACTCCCAAATCCGTGACTCCCGAGCCTCCTTATAATGAAAACAAGTATTCAGATGTTGATCTAGGACATCAAACACTTGCCGTTCCTCAGATGGATTGTCGGGATGAAATTCAAGCTGATTGTGAAGAGAAGGCAAATGATGATCTATCTATGGTAGAAACTGAAAATAATGAAGCGGCTGAGAATATCGAAAATAATGGAGATGAAGGCCAAAAGTGGTGGGATAGTGAATCACAAAATCTGTTGGATTCGCAACAACTGGTTGAAGCGTTGCACTTGTGTGATGATTTATTTCATAGCCAATCTCCCGCTAGAGATGGGAAAGATGAAGAACAAAAGAACCAAACAGGTCTTTCTGTTTATGCTGAATTAGGACCTGAGCATCTAAAGAAGGATATCGAAGACTGTCAAAATCTTGTCCTTGACCCTCCAAATGATGCTGAGCATGACACGAATTCAGAGTTACGACTAAGTCAACTGGAGTTTGGTTCGCAAGATAGCTTCATATCATGGGGTTACAGCAACAAGACATTAGGGTAG 1272 0.4104 MAGPSWLVDKSRIATKIKSAMGSCAPENVTWKSNPTKTCPNCQHAIDNNDVAKEWPGLPKGVKFDPSDQEIIWHLLAKVGVENLKPHPFVDEFITTLEVDDGICYTHPQNLPGVKQDGNASHFFHRAIKAYNTGTRKRRKIHDQDCGDVRWHKTGRTKPVILNGVQKGCKKIMVLYMSSAGGGKAEKTNWVMHQYHLGTEEDEKDREFVISKVFYQQQQVKLGDKDEQDIPEVGETTIVKVDPVTPKSVTPEPPYNENKYSDVDLGHQTLAVPQMDCRDEIQADCEEKANDDLSMVETENNEAAENIENNGDEGQKWWDSESQNLLDSQQLVEALHLCDDLFHSQSPARDGKDEEQKNQTGLSVYAELGPEHLKKDIEDCQNLVLDPPNDAEHDTNSELRLSQLEFGSQDSFISWGYSNKTLG 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00836 423 Coils Coil 286 306 - -
Vivi2g00836 423 Gene3D NAC domain 67 221 IPR036093 GO:0003677|GO:0006355
Vivi2g00836 423 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Vivi2g00836 423 SUPERFAMILY NAC domain 43 216 IPR036093 GO:0003677|GO:0006355
Vivi2g00836 423 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Vivi2g00836 423 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 381 IPR044799 GO:0003700
Vivi2g00836 423 FunFam NAC domain-containing protein 8 67 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00836 Vivi-Chr2 25837197 25840096 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00836 14 223 NAC Transcription Factor Family AT1G28470 52.511 3.86e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi2g00836 NAM 5.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00836 - - gmx:100799488 669.848