Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00823 ATGGCAAAGCAGCTCCACGAGATCAAGGAATTTCTCTTGACGGTGCGTAGAAAGGACGCGAGATCTGTGAAAATCAAGAGGAGTAAGGATGTGTTACTAAAGTTCAAGATTCGTTGCTGGAAGTATTTGTACAAGTTGTGTGTTTTTGATACTGATAAGGCTGATAAGTTGAGGCAATCTCTTCCTCCCAGTTTGATTGTTCAAGATCTGTAG 213 0.4131 MAKQLHEIKEFLLTVRRKDARSVKIKRSKDVLLKFKIRCWKYLYKLCVFDTDKADKLRQSLPPSLIVQDL 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00823 70 Pfam Ribosomal L38e protein family 3 69 IPR002675 GO:0003735|GO:0005840|GO:0006412
Vivi2g00823 70 Gene3D - 1 70 IPR038464 -
Vivi2g00823 70 PANTHER 60S RIBOSOMAL PROTEIN L38 1 69 IPR002675 GO:0003735|GO:0005840|GO:0006412
Vivi2g00823 70 FunFam 60S ribosomal protein L38 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00823 Vivi-Chr2 25260897 25263335 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00823 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 77.143 3.82e-34 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00823 K02923 - qsa:O6P43_007781 114.775