Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00804 ATGTCAGCACCGTCCCCACCACCTTCCATATCCACTCCTCCGCCTTCTTCACCGTCGCTGCCTCCTACTCCACCTCCGCTATCATCGCCGCCTCCTACTCCAACTCCGCCAAAAACCTCTCCTCCGCTATCATCGCTGCCTCCTACTCCAACTCCGCCAAAAACCTCTCCTCCGCCTTCACCTCCCTCCAATCCACCAACATCACCGCCGTCCAATCCATCTCCTCCACCGGAAAATTCACCACCTCCTTCCGTCATCGCCTCCACCACCCCTCAAAAACTTAACTCAAACTCCACCACCAGCATCACCTCCTCCTCCACCTTCAAATTCACCACCAAGGTTATCTCCTCCATCACCCTCAATCATTCTGTTGTCGCCGCCGCCGCCGCCGCAACAGAACGGATCAGAAACCGAAGCAGTGGTGGAATTGGTTCTGGTGCTGTAGTGGCTGTTGCCGTGTTTGGTGGAATTCTATTGCTTGGCTTCATTGGAGTTGCTATCTGCTGTTTGAGGAGGAGGCAAAAGAAAAAGGATTCTCCTAATGATGCTTATGTCGTGCCTTCCACTCTTCCCTCCTCATCTCAATCAGATTCATCCTTTTTTAAGATACATGCTGCCTCTGCTTCTTTTGTAACAAGTGGATCTAGCAGTAATGTTGAACATAAACCATCTGGCCCTGATGGTGGAATGAGCTACTCAAGGAACTGGTTTTCCTATGAAGAACTAATCAAGGCCACAGATGGTTTCTCAACTCTGAATCTTTTGGGAGAGGGTGGTTTTGGTTTTGTATATAAAGGATGTTTACCTGATGGGAGAGAGATAGCAGTGAAGCAGCTCAAAATCGGTGGAAGTCAAGGGGAGAGAGAATTCAAAGCTGAAGTTGAGATAATTAGTCGTATACATCATCGCCATTTGGTTTCTTTAGTTGGATACTGCATTCAAGATAACAGAAAAATACTTGTCTATGACTATGTACCTAACAACACCCTCCATTTTCATCTACATGAAAAAGGTCAACCAGTGCTGCAATGGGAAAAACGTGTTAAAATCGCAGCTGGTGCAGCTCGAGGAATAGCTTATCTCCATGAAGACTGCAATCCTCGGATTATTCACAGAGATATCAAGCCATCTAACATTCTTTTGGATTACAACTATGAAGCTCGTGTCTCAGATTTCGGTCTTGCCAAATTAGCTCTAGATACAAATACACATGTAACAACGCGTGTCATGGGAACTTTTGGGTATGTTGCCCCTGAATATGCGTCAAGTGGAAAACTGACTGACAGATCTGATGTATATTCCTTTGGTGTTGTAATTTTGGAGCTCATTACCGGACGGATGCCCGTAGATCCATCACAACTGGGAGATGAGAGTCTAGTTGAATGGGCTCGGCCTTTATTAAGTGATGCACTTGAAACTGGGGAATTTGAGAGTTTGGTAGATCCAAAGCTAGGAAAGAAGTACATTGATACTGAAATGTTTTGCATGATTGAAGTTGCTGCTGCTTGTGTTCGGCATTCAGCTGCTAAGAGACCTCACATGGGACAGGTTGTTAGAGCTTTTGAAAGCTTAGCAACTTCGGATTTAACAAATGGAATGCGAGTTGGTGAAAGCCAGGCGTTTGACTCTGCACAATCTGAAGAAATAAGATTATTTCAAAGGATGGCATTTGGTAGTCAAAATTATAGCTCGGACTTCTTTAATCACTCTAGCTTGCATATGTAA 1725 0.4522 MSAPSPPPSISTPPPSSPSLPPTPPPLSSPPPTPTPPKTSPPLSSLPPTPTPPKTSPPPSPPSNPPTSPPSNPSPPPENSPPPSVIASTTPQKLNSNSTTSITSSSTFKFTTKVISSITLNHSVVAAAAAATERIRNRSSGGIGSGAVVAVAVFGGILLLGFIGVAICCLRRRQKKKDSPNDAYVVPSTLPSSSQSDSSFFKIHAASASFVTSGSSSNVEHKPSGPDGGMSYSRNWFSYEELIKATDGFSTLNLLGEGGFGFVYKGCLPDGREIAVKQLKIGGSQGEREFKAEVEIISRIHHRHLVSLVGYCIQDNRKILVYDYVPNNTLHFHLHEKGQPVLQWEKRVKIAAGAARGIAYLHEDCNPRIIHRDIKPSNILLDYNYEARVSDFGLAKLALDTNTHVTTRVMGTFGYVAPEYASSGKLTDRSDVYSFGVVILELITGRMPVDPSQLGDESLVEWARPLLSDALETGEFESLVDPKLGKKYIDTEMFCMIEVAAACVRHSAAKRPHMGQVVRAFESLATSDLTNGMRVGESQAFDSAQSEEIRLFQRMAFGSQNYSSDFFNHSSLHM 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00804 574 FunFam Proline-rich receptor-like protein kinase PERK8 221 324 - -
Vivi2g00804 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 369 381 IPR008271 GO:0004672|GO:0006468
Vivi2g00804 574 SUPERFAMILY Protein kinase-like (PK-like) 228 520 IPR011009 -
Vivi2g00804 574 MobiDBLite consensus disorder prediction 1 103 - -
Vivi2g00804 574 Gene3D Transferase(Phosphotransferase) domain 1 325 542 - -
Vivi2g00804 574 Pfam Protein kinase domain 250 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g00804 574 PRINTS Proline rich extensin signature 30 46 - -
Vivi2g00804 574 PRINTS Proline rich extensin signature 6 27 - -
Vivi2g00804 574 PRINTS Proline rich extensin signature 49 66 - -
Vivi2g00804 574 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 157 555 IPR047117 -
Vivi2g00804 574 SMART serkin_6 249 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g00804 574 MobiDBLite consensus disorder prediction 1 84 - -
Vivi2g00804 574 Gene3D Phosphorylase Kinase; domain 1 213 324 - -
Vivi2g00804 574 ProSitePatterns Protein kinases ATP-binding region signature. 255 277 IPR017441 GO:0005524
Vivi2g00804 574 FunFam proline-rich receptor-like protein kinase PERK8 325 535 - -
Vivi2g00804 574 MobiDBLite consensus disorder prediction 85 103 - -
Vivi2g00804 574 ProSiteProfiles Protein kinase domain profile. 249 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00804 Vivi-Chr2 25157662 25163233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00804 143 573 Trihelix Transcription Factor Family AT5G38560 63.927 0.0 567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vivi2g00804 Pkinase 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00804 - - tpra:123889774 724.161