Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00801 ATGTTGTTTTGCTCCAATTTTGAATATCTACAGGCACCACCGTGTTTTAACACACTTGACTACTCCCTTGATCAACAATACCAGCACCTAACGAAATTTCGTGTCGGCGAAACTTCCGGTGAAAACAACAACGGAATGGTGGATAATTACATGCCTCAAACACAAAACTCAGGAGGCTTTTATGGTGGTACTACTACAAACAACTCTTTTGATAAAATGAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCTAAATTAGCCTTAAAGCGCCAAGAGTCCGAGATCGACGACCCGGTTTATTTTCTCAAGTTTCCTGTCTTAAACAACAAGACGGAAGACCGAAACGTGACGTTGAGTCATGAGTTGGTGGATAGTTTAAGAGATTGCGAAGAAACTCGGGTTTCTGATGAGAACAACTCGGTGCAGCTTGTGCAAGAGACGAATTGTACTGCAGTGGTGCAAGAGAACAGCAAGAAGAGGAAGAGACCGAGAACTGTTAAGACGAGTGAAGAAGTTGAGAGTCAACGCATGACTCATATTGCTGTTGAAAGGAATCGAAGGAAGCAAATGAATGAGCATCTTCGCGTCCTCAGATCCCTGATGCCTGGTTCATACGTTCAAAGGGGTGATCAAGCATCTATAATTGGTGGAGCTATAGAGTTTGTGAGGGAATTGGAACAACTTCTTCAATGTCTAGAATCACAAAAGAGAAGAAGACTAGTTGGAGAAACACAGTCAAAACAAGTTGGGGAATCAACACAGCAGCAGCAACAACAACAACAAGCTCCATTTTTTCAACAAGCTACTTTACCAAATGAGCAGATGGAAACCGGACTTGAAGAAGAAACTGCAGAGAGTAAGTCATGTTTGGCTGATGTAGAAGTCAAAGTTTTAGGATTTGATGCAATGATTAAAATCCTATCAAGAAGAAGGCCTGGACAGTTGATCAAGACCATTGCTGCCCTTGAAGATATGCAGCTTATCATCCTTCATACCAACATCACCACTATTGAACAAACCGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATACAAGGTTCACGGCAGAAGATATAGCAACTTCCGTTCAGCAGATACTAAGTTTTATTCATGCAAACACTAGCATGTGA 1140 0.4149 MLFCSNFEYLQAPPCFNTLDYSLDQQYQHLTKFRVGETSGENNNGMVDNYMPQTQNSGGFYGGTTTNNSFDKMSFADVMQFADFGPKLALKRQESEIDDPVYFLKFPVLNNKTEDRNVTLSHELVDSLRDCEETRVSDENNSVQLVQETNCTAVVQENSKKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLVGETQSKQVGESTQQQQQQQQAPFFQQATLPNEQMETGLEEETAESKSCLADVEVKVLGFDAMIKILSRRRPGQLIKTIAALEDMQLIILHTNITTIEQTVLYSFNVKVASDTRFTAEDIATSVQQILSFIHANTSM 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00801 379 PANTHER TRANSCRIPTION FACTOR FAMA 96 370 IPR044283 GO:0003700|GO:0010052
Vivi2g00801 379 MobiDBLite consensus disorder prediction 247 265 - -
Vivi2g00801 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 245 IPR036638 GO:0046983
Vivi2g00801 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 227 IPR011598 GO:0046983
Vivi2g00801 379 Pfam Helix-loop-helix DNA-binding domain 177 228 IPR011598 GO:0046983
Vivi2g00801 379 CDD bHLH_AtFAMA_like 179 246 - -
Vivi2g00801 379 Gene3D - 167 242 IPR036638 GO:0046983
Vivi2g00801 379 SMART finulus 182 233 IPR011598 GO:0046983
Vivi2g00801 379 MobiDBLite consensus disorder prediction 159 178 - -
Vivi2g00801 379 MobiDBLite consensus disorder prediction 245 265 - -
Vivi2g00801 379 FunFam Basic helix-loop-helix transcription factor 167 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00801 Vivi-Chr2 25134921 25136322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00801 35 379 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 58.942 6.62e-137 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g00801 HLH 7.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00801 K26213 - gmx:100813515 478.789