Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00800 ATGGAGAAAGATAACAACTATTCGGCACCACCGTGTTTTAACACACTTGACTACTCCCTTGATCAACAATACCAGCACCTAACGAAATTTCGTGTCGGCGAAACTTCCGGTGAAAACAACAACGGAATGGTGGATAATTACATGCCTCAAACACAAAACTCAGGAGGCTTTTATGGTGGTACTACTACAAACAACTCTTTTGATAAAATGAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCTAAATTAGCCTTAAAGCGCCAAGAGTCCGAGATCGACGACCCGGTTTATTTTCTCAAGTTTCCTGTCTTAAACAACAAGACGGAAGACCGAAACGTGACGTTGAGTCATGAGTTGGTGGATAGTTTAAGAGATTGCGAAGAAACTCGGGTTTCTGATGAGAACAACTCGGTGCAGCTTGTGCAAGAGACGAATTGTACTGCAGTGGTGCAAGAGAACAGCAAGAAGAGGAAGAGACCGAGAACTGTTAAGACGAGTGAAGAAGTTGAGAGTCAACGCATGACTCATATTGCTGTTGAAAGGAATCGAAGGAAGCAAATGAATGAGCATCTTCGCGTCCTCAGATCCCTGATGCCTGGTTCATACGTTCAAAGGGGTGATCAAGCATCTATAATTGGTGGAGCTATAGAGTTTGTGAGGGAATTGGAACAACTTCTTCAATGTCTAGAATCACAAAAGAGAAGAAGACTAGTTGGAGAAACACAGTCAAAACAAGTTGGGGAATCAACACAGCAGCAGCAACAACAACAACAAGCTCCATTTTTTCAACAAGCTACTTTACCAAATGAGCAGATGGAAACCGGACTTGAAGAAGAAACTGCAGAGAGTAAGTCATGTTTGGCTGATGTAGAAGTCAAAGTTTTAGGATTTGATGCAATGATTAAAATCCTATCAAGAAGAAGGCCTGGACAGTTGATCAAGACCATTGCTGCCCTTGAAGATATGCAGCTTATCATCCTTCATACCAACATCACCACTATTGAACAAACCGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATACAAGGTTCACGGCAGAAGATATAGCAACTTCCGTTCAGCAGATACTAAGTTTTATTCATGCAAACACTAGCATGTGA 1131 0.4164 MEKDNNYSAPPCFNTLDYSLDQQYQHLTKFRVGETSGENNNGMVDNYMPQTQNSGGFYGGTTTNNSFDKMSFADVMQFADFGPKLALKRQESEIDDPVYFLKFPVLNNKTEDRNVTLSHELVDSLRDCEETRVSDENNSVQLVQETNCTAVVQENSKKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLVGETQSKQVGESTQQQQQQQQAPFFQQATLPNEQMETGLEEETAESKSCLADVEVKVLGFDAMIKILSRRRPGQLIKTIAALEDMQLIILHTNITTIEQTVLYSFNVKVASDTRFTAEDIATSVQQILSFIHANTSM 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00800 376 CDD bHLH_AtFAMA_like 176 243 - -
Vivi2g00800 376 SMART finulus 179 230 IPR011598 GO:0046983
Vivi2g00800 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 224 IPR011598 GO:0046983
Vivi2g00800 376 FunFam Basic helix-loop-helix transcription factor 164 239 - -
Vivi2g00800 376 MobiDBLite consensus disorder prediction 242 262 - -
Vivi2g00800 376 Pfam Helix-loop-helix DNA-binding domain 174 225 IPR011598 GO:0046983
Vivi2g00800 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 242 IPR036638 GO:0046983
Vivi2g00800 376 MobiDBLite consensus disorder prediction 244 262 - -
Vivi2g00800 376 PANTHER TRANSCRIPTION FACTOR FAMA 93 367 IPR044283 GO:0003700|GO:0010052
Vivi2g00800 376 Gene3D - 164 239 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00800 Vivi-Chr2 25134921 25136699 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00800 32 376 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 58.942 3.84e-137 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g00800 HLH 7.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00800 K26213 - gmx:100813515 489.189