Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00798 ATGCACCTTCATAAAATGGGATTAGCCAACTACATCCAAGCATTGGAGGAAGAAAAGAAGAAAATCCAGGTTTTCTCCAGAGACCTTCCTCTCTCTCTTGAGCTTGTTACACAAGCCATTGAAAAATGTATACAACAGTTATCTGGAAGGGAGCGAAATTTGAATGGCCAATCGGAGTGTTCCGCGCAGATATCTACGGAAGAAGACCTTGTTGTTGAAGAATTTATTCCTATCAAGAAAACGGCATCACCATCTTATTGCGATGAAGAAGATAATGATGACAACGACGAACATTCATCACATAAGATGAAATCTGTTTGGCTAAGATCAGTTCAGTTATGGAGTCCCAACCCCTTACCTGCTAAAGAGACAGTACCTAGGAAAACAAGTGTTGTAGAAGTGAAAAGAATTGGTGGTGCATTTCACCCATTCCACAAAGAAAAAATTGCTGCTGAAAAGAGTGCACTAATCACTTCACCAGAACAAGTACCGGCTACAAGTTCTACTGAACCAGTTGTTGAAGGCAGCAACAAAATAGAGGATAAAGGACAGAGGAAGCAGCGTCGTTGCTGGTCGCAGGAACTGCATAAACGCTTCCTGCACGCCCTTCAACAACTTGGTGGTTCGCATTCTGCCACCCCGAAACAGATCAGGGAACTAATGAAAATAGATGGCCTCACCAACGATGAAATCAAGAGTCATTTGCAGAAATTTCGTCTGCACACAAGAAGGAGCCTGGTAATTCACAACAATGCTATTGCAAATTCACAAGCAGCTCATCTATTCTTGGTGGGGAACATTTACGTTCAGCCACAAGAATATGTTCCAATAGCCACGACCGCGACCGCTACCGTGTCAGGGGAATTGACCACAGTTACTACTCCAACGGGAACTTATGCACATCCTCAAGTCACCACCACATTTATAACGCCAAGGTTTAAGAAACAACACTTGTGTGAGAATTCACATTCTGAAGAAAGGGCTAATCACTGTGAAGGGGTGGTTGTTCAATCTAACTCCTCTGCCTCATCATATTCTACTCATACGCCTACAACTTTACTTGGCTGTTGA 1071 0.4304 MHLHKMGLANYIQALEEEKKKIQVFSRDLPLSLELVTQAIEKCIQQLSGRERNLNGQSECSAQISTEEDLVVEEFIPIKKTASPSYCDEEDNDDNDEHSSHKMKSVWLRSVQLWSPNPLPAKETVPRKTSVVEVKRIGGAFHPFHKEKIAAEKSALITSPEQVPATSSTEPVVEGSNKIEDKGQRKQRRCWSQELHKRFLHALQQLGGSHSATPKQIRELMKIDGLTNDEIKSHLQKFRLHTRRSLVIHNNAIANSQAAHLFLVGNIYVQPQEYVPIATTATATVSGELTTVTTPTGTYAHPQVTTTFITPRFKKQHLCENSHSEERANHCEGVVVQSNSSASSYSTHTPTTLLGC 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00798 356 FunFam Myb family transcription factor 185 243 - -
Vivi2g00798 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 314 IPR044787 GO:0003700|GO:0006355
Vivi2g00798 356 MobiDBLite consensus disorder prediction 158 185 - -
Vivi2g00798 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 243 IPR017930 -
Vivi2g00798 356 Pfam Myb-like DNA-binding domain 188 237 IPR001005 -
Vivi2g00798 356 NCBIfam myb-like DNA-binding domain, SHAQKYF class 186 241 IPR006447 GO:0003677
Vivi2g00798 356 Coils Coil 8 28 - -
Vivi2g00798 356 Gene3D - 185 243 - -
Vivi2g00798 356 MobiDBLite consensus disorder prediction 159 174 - -
Vivi2g00798 356 SUPERFAMILY Homeodomain-like 184 244 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00798 Vivi-Chr2 25064413 25066083 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00798 11 264 G2-like Transcription Factor Family AT1G25550 52.015 2.98e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi2g00798 Myb_DNA-binding 8.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00798 - - vvo:131646027 671.774