LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g00771	ATGACTAGCAATTGCCAAACTTCTGGTACTGGTCACAGTATCAGGGGCTTAATCTCCAACGCTGGTGCTGGTGCTGCTGCTGGGGCAATAGCTGCTACGTTTGTGTGTCCTTTGGATGTGATCAAGACAAGGCTACAAGTTCATGGCCTTCCACCTGTTCAAAAAGGTAGTGTCATTGTCACGAGCTTGCAGAATATAGTTAGGACGGAAGGCTTCAGGGGAATGTACCGTGGCCTTTCACCAACGATACTGGCATTACTTCCAAACTGGGCGGTTTACTTCACATGTTATGAGCAACTAAAGGGCTTGCTCCGGTCACATGAGGGTTGCAACGAACTCACAACTATGGGAAATATTATAGCTGCTGCTGGTGCTGGGGCAGCAACAGCAATATCTACAAATCCATTATGGGTTGTTAAGACAAGACTCCAAACACAAGGAATGAGGCCTAATGTTGTTCCTTACAAGAGTGTTCTTTCCGCTTTGACGAGGATTACACGTGAGGAAGGTCTACGAGGACTATATAGTGGCATTGTGCCGTCATTAGCTGGCGTAAGTCATGTAGCGATTCAATTCCCAGCATACGAAAAGATAAAGTCATACATTGCTAAAAAAGAGAACACAACTGTTGACAACCTTAGTCCTGGGAATGTCGCTATTGCGTCATCAATTTCAAAAGTAACTGCCTCTGTAATGACTTATCCGCACGAGGTAATACGTTCCCGGCTGCAAGAGCAAGGTCATGCGAAAAATAGCAACGGATTTCAATATGCTGGGGTTATTGACTGTGCTAAGAAGGTGTTTCAAAAGGAAGGAATTTCAGGATTTTATCGGGGTTGCGCAACTAATCTATTAAGAACAACTCCATCTGCTGTTATTACATTCACCAGTTACGAGATGATACACAGGTTTTTGACACGGACTATACCACAAAACGAGCCTAAAAAACCCAAGCCTGAAGCCGGTGATATTAATACTAAAAATGGAGGTGACAGGGATCAATCGCCATCTCAATCTAACAACATTCCTCTCGGAAACAAAGAGCAGCTAACAAGACATTGA	1062	0.4407	MTSNCQTSGTGHSIRGLISNAGAGAAAGAIAATFVCPLDVIKTRLQVHGLPPVQKGSVIVTSLQNIVRTEGFRGMYRGLSPTILALLPNWAVYFTCYEQLKGLLRSHEGCNELTTMGNIIAAAGAGAATAISTNPLWVVKTRLQTQGMRPNVVPYKSVLSALTRITREEGLRGLYSGIVPSLAGVSHVAIQFPAYEKIKSYIAKKENTTVDNLSPGNVAIASSISKVTASVMTYPHEVIRSRLQEQGHAKNSNGFQYAGVIDCAKKVFQKEGISGFYRGCATNLLRTTPSAVITFTSYEMIHRFLTRTIPQNEPKKPKPEAGDINTKNGGDRDQSPSQSNNIPLGNKEQLTRH	353

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g00771	353	Gene3D	Mitochondrial carrier domain	17	305	IPR023395	-
	Vivi2g00771	353	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	213	304	IPR018108	-
	Vivi2g00771	353	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	18	310	IPR044712	GO:0006862\|GO:0055085
	Vivi2g00771	353	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	15	103	IPR018108	-
	Vivi2g00771	353	MobiDBLite	consensus disorder prediction	313	327	-	-
	Vivi2g00771	353	Pfam	Mitochondrial carrier protein	18	106	IPR018108	-
	Vivi2g00771	353	Pfam	Mitochondrial carrier protein	113	205	IPR018108	-
	Vivi2g00771	353	Pfam	Mitochondrial carrier protein	213	306	IPR018108	-
	Vivi2g00771	353	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	113	201	IPR018108	-
	Vivi2g00771	353	MobiDBLite	consensus disorder prediction	308	353	-	-
	Vivi2g00771	353	PRINTS	Mitochondrial carrier protein signature	128	146	IPR002067	GO:0055085
	Vivi2g00771	353	PRINTS	Mitochondrial carrier protein signature	20	33	IPR002067	GO:0055085
	Vivi2g00771	353	PRINTS	Mitochondrial carrier protein signature	33	47	IPR002067	GO:0055085
	Vivi2g00771	353	PRINTS	Mitochondrial carrier protein signature	78	98	IPR002067	GO:0055085
	Vivi2g00771	353	PRINTS	Mitochondrial carrier protein signature	222	244	IPR002067	GO:0055085
	Vivi2g00771	353	SUPERFAMILY	Mitochondrial carrier	19	300	IPR023395	-
	Vivi2g00771	353	MobiDBLite	consensus disorder prediction	328	353	-	-
	Vivi2g00771	353	FunFam	Nicotinamide adenine dinucleotide transporter 2, mitochondrial	17	305	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g00771	Vivi-Chr2	23724380	23728343	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g00771	12	347	Chloroplast and Mitochondria Gene Families	AT1G25380	64.507	2.10e-145	414

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g00771	K15115		-	gmx:100797064	545.428