Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00770 ATGGCTACCTATTTTGTGTTCAGTTTCCTTTTACTACTCTCTCATTTTCTGTTTCTTCTCTCTGCTGCATCTGAATGGAAATACCAAGCAGAATGTGCAACAGGAGAATACACTGGGTGTGGAAATCTTGAAAAAATCGTCTTTCCCTTCACCACTGTTAACAAAAGCGAATGTGGCTTTTACATAAGTGGTTGTGACAACAATAGCACTTCACAGAAAAAAATTCAAATCAGGGGCCATAGTTATATAATTGATAGCATCAATTATAAGGAAAGTTCAGCTATCATCTATGGACCTATCATTGATGGACCTATCATCTATGGACCAAGTTCCTCTAAATTCAGCTTTAACACTATAAATACATTCTATGCATGCAAACATGACGACTATGACGATCGCCATGAAAACATGTTCAAAAATAAAAGCTGTTCAGATTATGATATCTACTTTACTTCTAAATCTGATCATCCAATTTCCCTTAATTTTCCATTACCATGTTTTCATGTTTCACTCTTTCCCCTTACCGATTGTGCATATTTAAGTTCGACACTCGAAATTAAAGTAGATTTAGAGTTTTGTAAAGGCTGTTTTACTGCAGGAGGCTTATGTCTACCAGATCAGGAAAATTTAAGTTTCGAATGTGTTCCTAGCAGTGATAGAAAGCAACGGCATATGAAAGCTGCGGTGATAGGTTTATCCATTGGATTGGCAACTGTGATTGCAATTGCCTTGACTCTTATAATTTGGCTTCTATACTATCGGAGAATCAAATCATCGGGTCTCAAAAACCAATCAAGAGCAAATTATCGCGGCCTTTCAAGAAATACAACAATCGAAAGTGGAGCTGTCTACTTTGGGATTCCGGTCTTCTCCTATGAGGAGCTCCAAAAGGCAACAGACAATTTTAATCAAGCTAGAGAGCTTGGAGAAGGAGGCTTTGGAACTGTTTACTACGGAAAGCTTGGAGATGGACGTGAAGTTGCAGTGAAGCGCCTATTCGAGCGCAGCTACAGACCAGTAGAATCATTCACAAACGAAATTCAGATCCTCACACGCATGCGCCACAGAAATCTTGTATCCCTTTATGGCTGCACTTCACGCCACAGTCGTGAGTTACTGTTAGTGTATGAATATATCCCTAACGGCACCGTCAATAGCCATCTCCACGACAAAAAAGAAAACCAAAGCTCATCTTTACCCTGGGCTGTGAGAATGAAAATAGCCATAGAAACCGCCGGGGCATTAACTTATCTCCATGCTTCTGATGTCATTCACCGAGACGTGAAAACCAGCAACATTCTACTTGACAACAGCTTTTGTGTTAAGGTTGCTGATTTTGGTCTTTCGAGACTGTATCCTAATGATGTCACTCATGTCTCTACAGCGCCGAGAGGAACACCGGGCTATGTTGATCCAGAATACCGGTTATGTTACCAGTTAACAAGCAAGAGTGATGTATATAGCTTTGGCGTAGTTCTTGTTGAGCTAATATCATCTTTGCCTGCAGTTGATTTCTCAAGAGATAGAGATGACATTAAGTTGGCAAATCTAGCAATAAGGAAGATTCAGAAAAGGGAATTTTCTGAGCTGATTGATCCTTCTCTTGGTTTTCAGACAGACGAGAATTTAAAAAATGTGATAAGTTGTGTTGCGGAATTGGCCTTTCAGTGTTTGCAAGATGAGAAGGAATTGAGACCCTCTATGAGTGAAGTATTGGAGGTGCTGCAGAAAATTGAAAGTGGCAAGAGTGAGGCAGAGAATCACGAGGGGATTGATTTTCATCATGGAGTAGGAGTAGCACAAAGTTATGCACATCCATCACTGCCAAACACTTGGATGAAGCCACAGCGCCATCAACAAACACTTTGA 1869 0.4029 MATYFVFSFLLLLSHFLFLLSAASEWKYQAECATGEYTGCGNLEKIVFPFTTVNKSECGFYISGCDNNSTSQKKIQIRGHSYIIDSINYKESSAIIYGPIIDGPIIYGPSSSKFSFNTINTFYACKHDDYDDRHENMFKNKSCSDYDIYFTSKSDHPISLNFPLPCFHVSLFPLTDCAYLSSTLEIKVDLEFCKGCFTAGGLCLPDQENLSFECVPSSDRKQRHMKAAVIGLSIGLATVIAIALTLIIWLLYYRRIKSSGLKNQSRANYRGLSRNTTIESGAVYFGIPVFSYEELQKATDNFNQARELGEGGFGTVYYGKLGDGREVAVKRLFERSYRPVESFTNEIQILTRMRHRNLVSLYGCTSRHSRELLLVYEYIPNGTVNSHLHDKKENQSSSLPWAVRMKIAIETAGALTYLHASDVIHRDVKTSNILLDNSFCVKVADFGLSRLYPNDVTHVSTAPRGTPGYVDPEYRLCYQLTSKSDVYSFGVVLVELISSLPAVDFSRDRDDIKLANLAIRKIQKREFSELIDPSLGFQTDENLKNVISCVAELAFQCLQDEKELRPSMSEVLEVLQKIESGKSEAENHEGIDFHHGVGVAQSYAHPSLPNTWMKPQRHQQTL 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00770 622 Gene3D Phosphorylase Kinase; domain 1 275 378 - -
Vivi2g00770 622 ProSiteProfiles Protein kinase domain profile. 302 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g00770 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Vivi2g00770 622 Gene3D Transferase(Phosphotransferase) domain 1 379 599 - -
Vivi2g00770 622 FunFam receptor-like protein kinase FERONIA 265 378 - -
Vivi2g00770 622 SMART serkin_6 302 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g00770 622 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 10 612 IPR044652 GO:0004672
Vivi2g00770 622 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Vivi2g00770 622 FunFam Wall-associated receptor kinase-like 20 379 588 - -
Vivi2g00770 622 SUPERFAMILY Protein kinase-like (PK-like) 279 576 IPR011009 -
Vivi2g00770 622 CDD STKc_IRAK 308 578 - -
Vivi2g00770 622 Pfam Protein kinase domain 303 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00770 Vivi-Chr2 23718676 23721369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00770 30 580 Receptor kinase-like Gene Family AT1G25390 45.870 6.28e-154 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi2g00770 Pkinase 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00770 - - var:108334729 585.104