Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00738 ATGGATCCTCCACCATCTCATGTCTCTAAAAGTAGAACAATATTGAAAATTAAATATGATGATCCTGATGCAACGGATTCTTCCTCCGATGAAAGAGATAATTTTATTGTTGATCCAACAAAGAGGAAGAGAGTTGTGGTTGAAATTTCATTCCCCAATGTTCCATGTGACCAAATTGTTGATAATGGATTGAACAAGAATAATAAGAATGTTGGAACACCAATGCATGAAGTGAAACAACCATCTTGCAAATACAAAGGTGTTCGAATGCGACAAGAGGGTCGATGGGCGGCAGAAATCAGAAACCCGATTAATGGTGCGCGTAGTTGGCTTGGAACTTTTGATAGCGCGGAAGAGGCTTCTAAGGCCTATGAAGCTAAAAGACATGAATTCGAAACCATATATAAAAAGGAACTGTGTAATAGGAAGAGGAACAAGAGATTGAAAAAAGTTTCTTTTGCTGAACCTATGGTTACTTCATTCAATGACTCGGAGAGTGACACGCCAAATATACCTTTATCTTCGCCGAAATTGGTTAAGAATGTTGAGGTTTCATGTGATGAAACTAATCCTTCAAAAACTTTGGACATAGTGCAAGAACCGAATGTGGTTGCGAGTGTTGATAAATCGTCCCAACTTGAATCGGATTGGTTAACATTTGATGATTCAGAAGTGGACTTGAATGATCTTAGCGGCCTTGATGACTTGAATGATATTGATATTCCATTTGATTTTGATTACTTTGGTACACAATTTGCGGTTGATCATAAGATTTCTAGTCGGAAAGAACCTCCTAATATACCCAAGCCATAA 813 0.3788 MDPPPSHVSKSRTILKIKYDDPDATDSSSDERDNFIVDPTKRKRVVVEISFPNVPCDQIVDNGLNKNNKNVGTPMHEVKQPSCKYKGVRMRQEGRWAAEIRNPINGARSWLGTFDSAEEASKAYEAKRHEFETIYKKELCNRKRNKRLKKVSFAEPMVTSFNDSESDTPNIPLSSPKLVKNVEVSCDETNPSKTLDIVQEPNVVASVDKSSQLESDWLTFDDSEVDLNDLSGLDDLNDIDIPFDFDYFGTQFAVDHKISSRKEPPNIPKP 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00738 270 Pfam AP2 domain 83 132 IPR001471 GO:0003700|GO:0006355
Vivi2g00738 270 SUPERFAMILY DNA-binding domain 84 131 IPR016177 GO:0003677
Vivi2g00738 270 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Vivi2g00738 270 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Vivi2g00738 270 MobiDBLite consensus disorder prediction 13 34 - -
Vivi2g00738 270 SMART rav1_2 84 149 IPR001471 GO:0003700|GO:0006355
Vivi2g00738 270 PIRSF PTI6 4 260 IPR017392 GO:0003700
Vivi2g00738 270 Gene3D AP2/ERF domain 83 138 IPR036955 GO:0003700|GO:0006355
Vivi2g00738 270 CDD AP2 83 126 IPR001471 GO:0003700|GO:0006355
Vivi2g00738 270 MobiDBLite consensus disorder prediction 1 34 - -
Vivi2g00738 270 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 199 - -
Vivi2g00738 270 ProSiteProfiles AP2/ERF domain profile. 84 143 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00738 Vivi-Chr2 21748684 21749496 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00738 15 247 AP2-EREBP Transcription Factor Family AT1G68550 31.621 2.67e-24 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g00738 AP2 3.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00738 - - psat:127122621 375.941