Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00734 ATGGATCCTCAACCATCTCGTGTCTCTAGGAGAAGAAGAATATTGAAAGTTGTATATGATGATCCTGATGCAACAGATTCGTCATCTGATGAAATTGTTATGGATCCAACAAAGAGGAAGAGAGTTGTGGTTGAAATTTCATACCCTAATGTTCCGATTCCGAGTGATCAAACCGTTGATAACGAATCGAAGAAGAACAAAAGGAGCTGTGGAGCACCGAAACACGAAGTGAAACAACCGTCTTGTAAGTATAAAGGAGTTCGAATGAGACAATGGGGTCGATGGGCTGCAGAAATCCGTAACCCGATTAATGGTACGCGTAATTGGCTTGGAACTTTCGATAGCGCGGAAGAGGCTTCTAAGGCTTATGAAGCTAAAAAACATGAATTCGAAACCATGTATAAGAAGGATTTGAGTAAAAGGAAGAGGAACAAGAGATTGAAAAAAGTCTCTTTTGCTGAACCTATGGTTACTTCTTTGAATGACTCGGAGACGGAGAGTGACACGCCAAATATACCTTCATCATCGCGCGAGTTCGTTGAAAGTGTTGAGGTTTCAAATGATGAGACTAATTCTTCAAAGCCTTTGGACATAGTGCAAGAACCGAATGTGGTTGCGAGTGTTGATACTTCGTCACAGCTTGAACCGAATTGGTTAACATTTGATGATTCGGAGTTGGAGTTGGACTTGGTTGCGAGCGATGATCTTAGTTGCCTTGATGACTTGAATGATATTGATATTCCATTTGATTTTGATTACTTTGGTACTCAATTTGCAGTCTATCATGGGATTACAGAACCTCGCAATCACAATAGGAGTTCGATTAAAGAGCGTCGCAATTTACCGGAGCAATAG 855 0.4094 MDPQPSRVSRRRRILKVVYDDPDATDSSSDEIVMDPTKRKRVVVEISYPNVPIPSDQTVDNESKKNKRSCGAPKHEVKQPSCKYKGVRMRQWGRWAAEIRNPINGTRNWLGTFDSAEEASKAYEAKKHEFETMYKKDLSKRKRNKRLKKVSFAEPMVTSLNDSETESDTPNIPSSSREFVESVEVSNDETNSSKPLDIVQEPNVVASVDTSSQLEPNWLTFDDSELELDLVASDDLSCLDDLNDIDIPFDFDYFGTQFAVYHGITEPRNHNRSSIKERRNLPEQ 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00734 284 SMART rav1_2 83 136 IPR001471 GO:0003700|GO:0006355
Vivi2g00734 284 MobiDBLite consensus disorder prediction 60 78 - -
Vivi2g00734 284 CDD AP2 82 125 IPR001471 GO:0003700|GO:0006355
Vivi2g00734 284 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Vivi2g00734 284 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Vivi2g00734 284 Gene3D AP2/ERF domain 82 136 IPR036955 GO:0003700|GO:0006355
Vivi2g00734 284 SUPERFAMILY DNA-binding domain 83 130 IPR016177 GO:0003677
Vivi2g00734 284 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 169 - -
Vivi2g00734 284 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
Vivi2g00734 284 MobiDBLite consensus disorder prediction 51 78 - -
Vivi2g00734 284 ProSiteProfiles AP2/ERF domain profile. 83 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00734 Vivi-Chr2 21589748 21590602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00734 3 208 AP2-EREBP Transcription Factor Family AT1G68550 36.967 2.26e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g00734 AP2 1.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00734 - - psat:127122621 377.096