Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00722 ATGCCAATGAACAATGGCCAAAGCCAACAATCCACCAGGTGGTATAAGCAATGCTTTATGCCCACAAGTGGTGATAGTTCAGATGATTCTGATACCGAATCTGTAGTCATAGCTCCATGTACTTCAACTCATACTAGTATATGGCAAGAACCTTCTCCACCACATTCACCACCTCATCCAGAACCTGATATCGACTGGCTTCCTCTTCCACCGCCGCCACCTCCTGATATCGACCGGCTTCCTCTTCCACCGCCGCCACCTCCGCCTTTTTTACCATTAACGCCGCTACAACGGTCTTCACAAATGCCATCACTATGGCAACCATTATCACCATCACCAAATCCAGTACCTCAACTCAACTGGAACTGGCGTACTCCACCGCCGCCGCCTCCTCCTCCTGTGTTACTAACAACACTTGCTTTACAACCACCACCACCACGGAATAATGGTTCCCCTTCTGTGATCGAGGAAGTTCGACCCGGTGTAAATCAAACCGAGTTCCTTCGAATTCCGGACAGTGTCATCAATGCAATTCAAATGGTAACAATCTCGGAGTTGCATGAAAGTGATGAACTCTCACAATGTCCTATCTGCATGGAGGACTTCAAACTGGGCGATCAAGCATGTCAATTACCCTGCAACCATAGGTACAAGTTTGAATGTATTCTTCGATGGCTTAACAACAACACGACATGTCCGGTTTGCAGACTTCAGTTAGAGGGTTTTGTTGGAGAAGGTAGTTGTTATAACATAAATGATGATGGTGATGGTGATGGTGATCATGATGATGATAGTTTAGACCTTGAACCTCAAATTCCACCACCAGAAGTAAATATTAGTTTGGAAGACCTTTTTCAGTTTTCTCCACGTTCGCATGTTACAGAGAATGGTGCAGATCACAACTCTGATGAAGGTGACTATGACAGTGCATGTGATGATTTAGGTGATGCTCATGAAGATGGAGAAAGATTTGGTAATAATTCAAGTAGTCGTAATTCACAAATTTAG 1008 0.4454 MPMNNGQSQQSTRWYKQCFMPTSGDSSDDSDTESVVIAPCTSTHTSIWQEPSPPHSPPHPEPDIDWLPLPPPPPPDIDRLPLPPPPPPPFLPLTPLQRSSQMPSLWQPLSPSPNPVPQLNWNWRTPPPPPPPPVLLTTLALQPPPPRNNGSPSVIEEVRPGVNQTEFLRIPDSVINAIQMVTISELHESDELSQCPICMEDFKLGDQACQLPCNHRYKFECILRWLNNNTTCPVCRLQLEGFVGEGSCYNINDDGDGDGDHDDDSLDLEPQIPPPEVNISLEDLFQFSPRSHVTENGADHNSDEGDYDSACDDLGDAHEDGERFGNNSSSRNSQI 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00722 335 Pfam Ring finger domain 194 236 IPR001841 -
Vivi2g00722 335 MobiDBLite consensus disorder prediction 1 111 - -
Vivi2g00722 335 SMART ring_2 195 235 IPR001841 -
Vivi2g00722 335 CDD RING-H2_PA-TM-RING 194 236 - -
Vivi2g00722 335 MobiDBLite consensus disorder prediction 292 335 - -
Vivi2g00722 335 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Vivi2g00722 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 241 IPR013083 -
Vivi2g00722 335 SUPERFAMILY RING/U-box 174 239 - -
Vivi2g00722 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 112 239 - -
Vivi2g00722 335 MobiDBLite consensus disorder prediction 253 275 - -
Vivi2g00722 335 MobiDBLite consensus disorder prediction 296 325 - -
Vivi2g00722 335 MobiDBLite consensus disorder prediction 1 50 - -
Vivi2g00722 335 MobiDBLite consensus disorder prediction 51 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00722 Vivi-Chr2 21048465 21049768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00722 173 254 C3H Transcription Factor Family AT1G68180 39.080 1.85e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00722 - K11982 cam:101501744 295.819