Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00713 ATGAACATGGACATAGACATAGACATGATCATGGATATGGATGCAATCCCAGATTTTCTACACTTTTCCAGTTACACTCACAGCACAACCTCACCCACTTCCGAAGACGATACCTTAAACAACACCTGGTCCCCCCTCCTCGATTTCGATTTCTTCCCCGCCAACCAAGACCACTTCCACGACTTCATTGATTCCCTCACCAACAACGATGAAATCACAACCGTTCATCCAAATCTACTCAACCCTGTCTCCGAGGAAGAAGAAGAACAACAATCATCCATCGGAAACCGAACAGACGAAGATAACGACAGAAAAGGCCTCCGTCTTGTTCACCTCCTCATGGCCGCGGCGGAGGCTCTCACCGGCACCAACAAAAACCACCGTCTAGCTCAAGTGATATTGATTCGGCTCAAAGACTTAGTGTCTTCCACTCACGGCACCAACATGGAGAGACTCGCCGCGTATTTCACCGAAGCGCTACAAACTCTACTCAACGGCGTCGACTCTGCAAACTCCACCAACCATCACCATCACCACCAGAAGCTTTGCTTACTCACTGCACCCCATCAAACAGACCTCCTCTCCGCCTTCCAGCTTCTCCAAGACATGTCCCCTTACGTCAAGTTCGCTCACTTCACGGCCAACCAAGCCATCCTCGAAGCCGTTACACACAAACGTAGACTTCACATCGTCGACTACGATATCATGGAAGGAGCCCAATGGGCTTCACTCATTCAATCACTTTCATCACGGAAAGACGGCATCCCGGGCCCACATCTCCGCATCACTGCATTATCTAGAAACAAAGAGCGTGGAAGTGGACGGAGATCTATAGCTACCGTTCAAGAAACCGGGAAAAGACTAACGGCGTTTGCGGCTTCCGTTGGACAGCCGTTTACTTTTCATCAATGTAGATTGGAGTCAGACGAAACGTTTAGAGCTTCTTCGTTGAAGCTGGTTCGTGGTGAGGCTTTGGTGTTTAACTGTGTGATGAATTTGCCTCATCTTAGTTACCGGGCTTCGGACTCCGTTGCTTCGTTTTTGAACGGTGCGAAGGAGTTGAGATCGAAGCTTGTGACGTTGGTTGAGGAGGAGGTTGGGCCCGTGAATGATGCGGGCTTTGTGGGCTTGTTTATGGATTCGTTGCATCGGTATTCGGCGATGTATGATTCACTTGAGGCTGGGTTTCCGATGAATAAATGGGCTCGGGCTTTGGTGGAGCAAGTGTTTATGGGCCCGAGGATAATGGGCTCAGTGGCTCAACTTTATATGGGTGGTGAAGAGGAGGGGCAAGAGAAGGGCTCTTGGGGGGAGTGGTTGAGTGCGGAGGGGTTCAGGGGAGTTAGTGTGAGCTATGGTAATCATTGCCAAGCGAAGCTGTTGTTGGGTCTGTTTAATGATGGGTATAGGGTGGAGGAATTGGGGAACAATAAGTTGGTGTTAGGTTGGAAATCAAGGCGTTTACTTTCTGCTTCTATTTGGACTTGTAACTCAGAGTCTGAATCTGATTTTTAG 1515 0.4917 MNMDIDIDMIMDMDAIPDFLHFSSYTHSTTSPTSEDDTLNNTWSPLLDFDFFPANQDHFHDFIDSLTNNDEITTVHPNLLNPVSEEEEEQQSSIGNRTDEDNDRKGLRLVHLLMAAAEALTGTNKNHRLAQVILIRLKDLVSSTHGTNMERLAAYFTEALQTLLNGVDSANSTNHHHHHQKLCLLTAPHQTDLLSAFQLLQDMSPYVKFAHFTANQAILEAVTHKRRLHIVDYDIMEGAQWASLIQSLSSRKDGIPGPHLRITALSRNKERGSGRRSIATVQETGKRLTAFAASVGQPFTFHQCRLESDETFRASSLKLVRGEALVFNCVMNLPHLSYRASDSVASFLNGAKELRSKLVTLVEEEVGPVNDAGFVGLFMDSLHRYSAMYDSLEAGFPMNKWARALVEQVFMGPRIMGSVAQLYMGGEEEGQEKGSWGEWLSAEGFRGVSVSYGNHCQAKLLLGLFNDGYRVEELGNNKLVLGWKSRRLLSASIWTCNSESESDF 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00713 504 ProSiteProfiles GRAS family profile. 100 495 IPR005202 -
Vivi2g00713 504 MobiDBLite consensus disorder prediction 79 102 - -
Vivi2g00713 504 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 88 491 IPR005202 -
Vivi2g00713 504 Pfam GRAS domain family 109 495 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00713 Vivi-Chr2 20045383 20047226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00713 64 498 GRAS Transcription Factor Family AT3G54220 34.989 1.94e-55 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi2g00713 GRAS 9.6e-102 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00713 - - vvi:100250491 602.823