Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00692 ATGGCTGAAGAACAGTTTCAACCTAGTGGAAATTGGTGGGAGACACCAGCTAGAAACATGAGATTTGAAAGTGTTGAACAACAACAACAACAGCAACAACAATCTTCTTCCTTTGGTGGTTGGCAGCAGCAGCAACAACAACATCATGATACTATGTCTGCTTCCGGTAGTTCTTCGGTTGTTTTTCATGAAAAGCTTCAACCTTCAGATTCTTCTACTTCAAATAATGACAACAACAACAACAATAACTTGCATATGATGAATTTAGGACTTTCATCTCAAACCATTGATTGGAATCAAGCATCTTTACTAAGAAGTGACAAGGCTTCAGAAGGAAGTTTTAGGTCTATGCTGCAAGAGAATTTGAATTCATCAAGCACAAATTTTGATCAAGAAACTGGATTGAGTCATTGGAGACAAGAATCTTGTAATAATAACAATGAATTCAAGCAAGTGAATAGAGGTTTCTCTTTGGATCAAACACAGTTTAGTCCTCAATATAGTTCAGGAGATAGTAACATGATAAGCCAATTGGATTCTTCAGCTTTGTATGGTAACCCTTCCATGTTACAAGGACTTTTAGGAACTGAAACTAATCAAATTCAACCTCAACATGGTAATAGTTCCATGAATTTTCCTTATTCGTCAACGAGCTTCGGTTTGAGTTCAAATGATTTAATTCCTTCTTGGTCTAAAATACCTCAACAAAAACAACAACAACAATTGCATTTCACCAATAACGCTCCTTTCTGGAATGCTTCGGAGTCGAGTATTAAAGATTCTTCATCTAGCTTCTTGCCTCCATTTTCCAATCCAAATTTTGGTGCACAAACAAAGAATATATCTGAAGGTAGGGACCCAAGTGGTGTGGTGAAGAAAAGTGGGAGTGAGCCTGCACCAAAAAGGTCCAGAAATGAAACCCCATCACCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAAATGGGGGACAGAATCACTGCACTTCAACAATTGGTTTCACCTTTTGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCAATTGAATATATCAAGTTTCTTCATGAACAAGTGACTATTTTAAGCACACCATATATGAAAAGTGGTGCTCCAATCCAACATCAACAGGGTTGTGGTAAATCTAAGGAAGTAGAGGGTCCAAAGCAAGATCTTAGAAGCAGAGGGTTGTGCTTAGTACCAGTTTCTAGTACGTTTCCAATGACTCATGAACCCACAGTTGAATATTGGACACCAACATTTGGAGGAACTTTCAGATAA 1278 0.3818 MAEEQFQPSGNWWETPARNMRFESVEQQQQQQQQSSSFGGWQQQQQQHHDTMSASGSSSVVFHEKLQPSDSSTSNNDNNNNNNLHMMNLGLSSQTIDWNQASLLRSDKASEGSFRSMLQENLNSSSTNFDQETGLSHWRQESCNNNNEFKQVNRGFSLDQTQFSPQYSSGDSNMISQLDSSALYGNPSMLQGLLGTETNQIQPQHGNSSMNFPYSSTSFGLSSNDLIPSWSKIPQQKQQQQLHFTNNAPFWNASESSIKDSSSSFLPPFSNPNFGAQTKNISEGRDPSGVVKKSGSEPAPKRSRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTILSTPYMKSGAPIQHQQGCGKSKEVEGPKQDLRSRGLCLVPVSSTFPMTHEPTVEYWTPTFGGTFR 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00692 425 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 94 406 - -
Vivi2g00692 425 SMART finulus 316 360 IPR011598 GO:0046983
Vivi2g00692 425 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 354 IPR011598 GO:0046983
Vivi2g00692 425 MobiDBLite consensus disorder prediction 1 86 - -
Vivi2g00692 425 MobiDBLite consensus disorder prediction 262 313 - -
Vivi2g00692 425 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 315 372 IPR036638 GO:0046983
Vivi2g00692 425 Gene3D - 315 374 IPR036638 GO:0046983
Vivi2g00692 425 CDD bHLH_AtbHLH_like 311 362 IPR045239 -
Vivi2g00692 425 FunFam Transcription factor bHLH123 family 315 377 - -
Vivi2g00692 425 MobiDBLite consensus disorder prediction 21 86 - -
Vivi2g00692 425 MobiDBLite consensus disorder prediction 262 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00692 Vivi-Chr2 19280534 19284845 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00692 105 425 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 45.312 1.11e-73 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00692 - - gmx:100818424 513.072