Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00675 ATGGCTGAAGAACAGTTTCAACCTAGTGGAAATTGGTGGGAGACACCAGCTAGAAACATGAGATTTGAAAGTGTTGAACAACAACAACAGCAGCAACAACAATCTTCTTCCTTTGGTGGTTGGCAGCATCAGCAGCAACAACAACATCATGATACTATGTCTGCTTCCGGTAGTTCATCGGTTGTTTTTCATGAAAAGCTTCAACCTTCAGATTCTTCTACTTCAAATAATGACAACAACAACAATAACAATTTGCATATGATGAATTTAGGACTTTCATCTCAAACCATTGATTGGAATCAAGCATCTTTACTAAGAAGTGACAAGGCTTCAGAAGGAAGTTTTAGGTCTATGCTTCAAGAGAATTTGAATTCATCAAGCACAAATTTTGATCAAGAAACTGGATTGAGTCATTGGAGACAAGAATCTTGTAATAATAACAATGAATTCAAGCAAGTGAATAGAGGTTTTTCTTTGGATCAAACACAGTTTAGTCCTCAATATAGTTCAGGAGATAGTAACATGATAAGCCAATTGGATTCTTCAGCTTTGTATGGTAACCCTTCCATGTTACAAGGACTTTTAGGAACTGAAACTAATCAAATTCAACCTCAACATGGTAATAATTCCATGAATTTTCCTTACTCGTCAACGAGCTTCGGTTTGAGTTCAAATGATTTAGTTCCCTCTTGGTCTAAAATACCTCAACAAAAACAACAACAACAATTGCATTTCACCAATAACGCTCCTTTCTGGAATGCTTCGGAGTCGAGTATTAAAGATTCTTCATCTAGCTTCTTGCCTCCATTTACCAATCCAAATTTTGGTGCACAAACAAAGAATATATCTGAAGGTAGGGACCCAAGTGGTGTGGTGAAGAAAAGTGGGAGTGAGCCTGCACCAAAAAGGTCCAGAAATGAAACCCCATCACCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAAATGGGGGACAGAATCACTGCACTTCAACAATTGGTTTCACCTTTTGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCAATTGAATATATCAAGTTTCTTCATGAACAAGTGACTATTTTAAGCACACCATATATGAAAAGTGGTGCTCCAATCCAACATCAACAGGGTTGTGGTAAATCTAAGGAAGTAGAGGGTCCAAAGCAAGATCTTAGAAGCAGAGGGTTGTGCTTAGTACCGGTTTCTAGTACATTTCCAATGACTCATGAACCCACAGTTGAATATTGGACACCAACATTTGGAGGAACTTTCAGATAA 1281 0.3817 MAEEQFQPSGNWWETPARNMRFESVEQQQQQQQQSSSFGGWQHQQQQQHHDTMSASGSSSVVFHEKLQPSDSSTSNNDNNNNNNLHMMNLGLSSQTIDWNQASLLRSDKASEGSFRSMLQENLNSSSTNFDQETGLSHWRQESCNNNNEFKQVNRGFSLDQTQFSPQYSSGDSNMISQLDSSALYGNPSMLQGLLGTETNQIQPQHGNNSMNFPYSSTSFGLSSNDLVPSWSKIPQQKQQQQLHFTNNAPFWNASESSIKDSSSSFLPPFTNPNFGAQTKNISEGRDPSGVVKKSGSEPAPKRSRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTILSTPYMKSGAPIQHQQGCGKSKEVEGPKQDLRSRGLCLVPVSSTFPMTHEPTVEYWTPTFGGTFR 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00675 426 CDD bHLH_AtbHLH_like 312 363 IPR045239 -
Vivi2g00675 426 Gene3D - 316 375 IPR036638 GO:0046983
Vivi2g00675 426 MobiDBLite consensus disorder prediction 262 314 - -
Vivi2g00675 426 SMART finulus 317 361 IPR011598 GO:0046983
Vivi2g00675 426 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 316 373 IPR036638 GO:0046983
Vivi2g00675 426 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 84 407 - -
Vivi2g00675 426 MobiDBLite consensus disorder prediction 21 87 - -
Vivi2g00675 426 MobiDBLite consensus disorder prediction 262 285 - -
Vivi2g00675 426 MobiDBLite consensus disorder prediction 1 87 - -
Vivi2g00675 426 FunFam Transcription factor bHLH123 family 316 378 - -
Vivi2g00675 426 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 306 355 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00675 Vivi-Chr2 18648879 18653124 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00675 106 426 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 45.550 1.66e-73 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00675 - - gmx:100818424 518.464