Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi2g00652 | ATGTCAAAGAAGAAGTCTAGCTTAGGGAGACAAAAAATTCCTATTGAAAAAATACCAAAAAAAAGTCATTTGCAAGTTACTTTCTCTAAACGCCGTTCAGGGCTATTCAAAAAAGCTAGTGAACTTTGCACTCTCTGTGGCGCTGAAATTGCAATGGTAGTTTTCTCTCCAGCTGACAAGGCATTTTCATTTGGCCATCCAGAAGTCGAGTCTATTGTTGATCGTTTTTTGACTCGCAATCCTCCACCAGAATCCAGTACTCTCCAACTTGTCGAGGCTCATAGAAATGCTAATGTTCGTGATCTCAACATTCAATTGACTCAACTTCTTAACCATTTGGAGATTGAAAAGAAACAAGGGGAGGAGATAGAGCAAGCGAGGAAAGTTAGGCAAAGCCAATTTTGGTGGGAGAGTCCAATTGATGAGCTTGCCTTGAATGAATTGGTTCAATTAAAGGGATCTATTGAGGAGTTAAAGAAGAACGTGGGAAAATTTGCTAACAAATGCATCATAGAACAATCTAATGCATCTTCATCAAACATGGGAGGAGTTAATGGATTTGGACGTTATGATTCATTTGACAACAAATTTGGGCTTGGAATCAATCTTGTTCCCACATATCCTAATGCCTATTTTGGTTTTCAAAATGGGTATCTTTAA | 660 | 0.3833 | MSKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGAEIAMVVFSPADKAFSFGHPEVESIVDRFLTRNPPPESSTLQLVEAHRNANVRDLNIQLTQLLNHLEIEKKQGEEIEQARKVRQSQFWWESPIDELALNELVQLKGSIEELKKNVGKFANKCIIEQSNASSSNMGGVNGFGRYDSFDNKFGLGINLVPTYPNAYFGFQNGYL | 219 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi2g00652 | 219 | Coils | Coil | 99 | 119 | - | - | |
Vivi2g00652 | 219 | Gene3D | - | 87 | 181 | - | - | |
Vivi2g00652 | 219 | Gene3D | - | 20 | 86 | IPR036879 | GO:0003677|GO:0046983 | |
Vivi2g00652 | 219 | PANTHER | MADS BOX PROTEIN | 10 | 164 | - | - | |
Vivi2g00652 | 219 | PRINTS | MADS domain signature | 30 | 45 | IPR002100 | GO:0003677|GO:0046983 | |
Vivi2g00652 | 219 | PRINTS | MADS domain signature | 10 | 30 | IPR002100 | GO:0003677|GO:0046983 | |
Vivi2g00652 | 219 | PRINTS | MADS domain signature | 45 | 66 | IPR002100 | GO:0003677|GO:0046983 | |
Vivi2g00652 | 219 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 17 | 64 | IPR002100 | GO:0003677|GO:0046983 | |
Vivi2g00652 | 219 | SUPERFAMILY | SRF-like | 9 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Vivi2g00652 | 219 | CDD | MADS_MEF2_like | 9 | 78 | IPR033896 | GO:0000977|GO:0045944 | |
Vivi2g00652 | 219 | ProSiteProfiles | MADS-box domain profile. | 8 | 68 | IPR002100 | GO:0003677|GO:0046983 | |
Vivi2g00652 | 219 | SMART | madsneu2 | 8 | 67 | IPR002100 | GO:0003677|GO:0046983 | |
Vivi2g00652 | 219 | FunFam | Agamous-like MADS-box protein AGL62 | 20 | 86 | - | - | |
Vivi2g00652 | 219 | Coils | Coil | 141 | 168 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi2g00652 | Vivi-Chr2 | 17826456 | 17827115 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi2g00652 | 5 | 162 | Type I MADS-box Gene Family | AT5G60440 | 57.764 | 2.97e-58 | 184 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Vivi2g00652 | SRF-TF | 6.1e-23 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi2g00652 | - | - | gmx:100793705 | 311.227 |