Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00641 ATGATGAAGATGATGAATGTGTTGAGTAAGAAGAAGAAGCAGCTTGGAGTGTTGTTGCAACTATGTTTCTTGCTATGTGCTTGTTCTGAGAAGACATTGTTAAGAGGAGCTTCAAAGAATATCAATGGCCTTGAATCAACAACATCTATAGTTAAGTTAAATACAGATGACCAACAACAGTTGGTTGTTGATAATGGTATTGTTTCTGTGACTTTGTCACGACCTGAGGGGTACATCATTCAAATATCATATAATGGAGTTGACAATATTCTTGAAACGGAAAATGAAGAAGAAGATAGAGGATACTTTGACGTTTATTGGAATAGACCCGGAAAAATGGGTAATTCTTCGAGAATCCATGGAACAAACTTTTCAATTATTTCAGCTGATGAGAATAAGGTGGAGATTTCATTTTTAAGAGTATGGACACCTTCTATGATTGACACAGATGTTCCTATAAACATAGACAAAAGATACGTTTTCAGAAGCGGTGATTCGGGGTTTTATTCATATGTGATATTTGATCGACCCGAAGGAATGCCAGCAGTTGAAGTTGATCAAATTAGATATGTTTACAAACTCAATAAAGACATGTTTAAGTATATGGCATTATCTCATACAAGGCAAAGAAGCATGCCATCGATGAAAGATCGACTAACAGGTCAAACGTTAGCTTATCCAGAAGCTGTTCTATTAACTAAACCAATTGATCCACAATTTAGAGGAGAAGTGGACGATAAATATCAATACTCATGTGAGAACACAGATAACAATGTTCACGGATGGGCTAGTTTTGATTCTGATAAGCCCATGGGCTTTTGGATGATAACACCAAGTAACGAGTTTCGTAATGGTGGTCCCATTAAACAAGATCTTACTTCTCATGTTGGGCCCATTACTCTCTCGATGTTTGTGAGCACACACTATGCTGGAAAGGAAGTGACAATGGCATTTGAAGAAGGTGAAACTTATAAAAAGGTGTTTGGTCCTGTTTTTGTTTATCTCAACACTGATTCAAGTGCAAATGACAATTCAACCCTTTGGTCAGATGCTGTGCAACAGTTATCCACACAAGTTCAAAGTTGGCCTTATGATTTTCCTCAATCACAAGATTATTTTCCCTCCAATCAAAGAGGAACAGTGCTTGGAAGATTACTAGTTCAAGATAGATACTTCAAAGGAGGGAGATTTCAATATACAAATGCTTATGTTGGTCTAGCTTTGCCTGGAGATGCAGGATCATGGCAGAGAGAAAGCAAGGGTTATCAGTTCTGGACGCGAGCTAACACGAAGGGATACTTCAAAATAAATAATATTGTGCCAGGCAACTATAGTTTGTATGGTTGGGTCTCTGGATTCATTGGTGATTACAAGTTCAATTCTACAATCGCCATCACCTCAGGAGGAGTCGTAAACTTGAATACACTTGTATACAATCCTCCAAGAAACGGACCAACCATTTGGGAAATCGGGTTCCCAGATCGATTGGCTTCAGAATTTCATGTTCCAGACCCTTACCCTACTCTCTTGAACAAGTTATACTCCGAACAGCGTAAAAACAAGTTTCGACAATATGGATTGTGGGAACGTTACAGTGATATATATTCGAATGGTGATCTTGTTTACACTGTTGGTATTGACAAGAATGATGATTGGTTTTATGCTCATGTTACAAAAATAACAGAAAACAAAACATATGAACCAACAACATGGCAAATTATATTTGAACATCAAAATGACATTATCATCGGAAACTATACATTACAACTAGCCTTAGCCAGTGCTGCTGATGCAAATCTACAGGTTCGATTCAACGACGCTAGCGTAGATCCGCCTCATTTTGCGACAGGGCGCATTGGAGGAGACAATGCGATAGCGAGACACGGAATTCATGGATTGTATTGGTTGTTTAGCATTGATGTTCCGAGTAATGTTCTTGTGAAAGGACAAAATGTCATCTATTTGATGCAGTCGAGAGCGATTAATCCTTTTCAAGGAGTTATGTATGATTATATTCGGTTAGAACGGCCCCCGATAACTTGA 2043 0.3823 MMKMMNVLSKKKKQLGVLLQLCFLLCACSEKTLLRGASKNINGLESTTSIVKLNTDDQQQLVVDNGIVSVTLSRPEGYIIQISYNGVDNILETENEEEDRGYFDVYWNRPGKMGNSSRIHGTNFSIISADENKVEISFLRVWTPSMIDTDVPINIDKRYVFRSGDSGFYSYVIFDRPEGMPAVEVDQIRYVYKLNKDMFKYMALSHTRQRSMPSMKDRLTGQTLAYPEAVLLTKPIDPQFRGEVDDKYQYSCENTDNNVHGWASFDSDKPMGFWMITPSNEFRNGGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFEEGETYKKVFGPVFVYLNTDSSANDNSTLWSDAVQQLSTQVQSWPYDFPQSQDYFPSNQRGTVLGRLLVQDRYFKGGRFQYTNAYVGLALPGDAGSWQRESKGYQFWTRANTKGYFKINNIVPGNYSLYGWVSGFIGDYKFNSTIAITSGGVVNLNTLVYNPPRNGPTIWEIGFPDRLASEFHVPDPYPTLLNKLYSEQRKNKFRQYGLWERYSDIYSNGDLVYTVGIDKNDDWFYAHVTKITENKTYEPTTWQIIFEHQNDIIIGNYTLQLALASAADANLQVRFNDASVDPPHFATGRIGGDNAIARHGIHGLYWLFSIDVPSNVLVKGQNVIYLMQSRAINPFQGVMYDYIRLERPPIT 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00641 680 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 52 678 - -
Vivi2g00641 680 FunFam Rhamnogalacturonate lyase B 374 473 - -
Vivi2g00641 680 Pfam Rhamnogalacturonate lyase family 47 244 IPR010325 -
Vivi2g00641 680 CDD RGL4_M 377 476 IPR029413 -
Vivi2g00641 680 CDD RGL4_C 488 675 - -
Vivi2g00641 680 Gene3D - 373 476 - -
Vivi2g00641 680 SUPERFAMILY Galactose-binding domain-like 483 675 IPR008979 -
Vivi2g00641 680 CDD RGL4_N 54 343 - -
Vivi2g00641 680 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Vivi2g00641 680 Gene3D - 483 675 - -
Vivi2g00641 680 Gene3D - 53 357 IPR014718 GO:0030246
Vivi2g00641 680 Pfam Polysaccharide lyase family 4, domain III 486 674 IPR029411 -
Vivi2g00641 680 SUPERFAMILY Starch-binding domain-like 372 476 IPR013784 GO:0030246
Vivi2g00641 680 SUPERFAMILY Galactose mutarotase-like 55 344 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vivi2g00641 680 Pfam Polysaccharide lyase family 4, domain II 401 472 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00641 Vivi-Chr2 17505242 17511140 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00641 51 678 Polysaccharide Lyase AT1G09910 53.883 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00641 K18195 - gmx:100776664 1014.99