Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00640 ATGATGAAGATGATGAATGTGTTGAGTAAGAAGAAGAAGCAGCTTGGAGTGTTGTTGCAACTATGTTTCTTGCTATGTGCTTGTTCTGAGAAGACATTGTTAAGAGGAGCTTCAAAGAATATCAATGGCCTTGAATCAACAACATCTATAGTTAAGTTAAATACAGATGACCAACAACAGTTGGTTGTTGATAATGGTATTGTTTCTGTGACTTTGTCACGACCTGAGGGGTACATCATTCAAATATCATATAATGGAGTTGACAATATTCTTGAAACGGAAAATGAAGAAGAAGATAGAGGATACTTTGACGTTTATTGGAATAGACCCGGAAAAATGGGTAATTCTTCGAGAATCCATGGAACAAACTTTTCAATTATTTCAGCTGATGAGAATAAGGTGGAGATTTCATTTTTAAGAGTATGGACACCTTCTATGATTGACACAGATGTTCCTATAAACATAGACAAAAGATACGTTTTCAGAAGCGGTGATTCGGGGTTTTATTCATATGTGATATTTGATCGACCCGAAGGAATGCCAGCAGTTGAAGTTGATCAAATTAGATATGTTTACAAACTCAATAAAGACATGTTTAAGTATATGGCATTATCTCATACAAGGCAAAGAAGCATGCCATCGATGAAAGATCGACTAACAGGTCAAACGTTAGCTTATCCAGAAGCTGTTCTATTAACTAAACCAATTGATCCACAATTTAGAGGAGAAGTGGACGATAAATATCAATACTCATGTGAGAACACAGATAACAATGTTCACGGATGGGCTAGTTTTGATTCTGATAAGCCCATGGGCTTTTGGATGATAACACCAAGTAACGAGTTTCGTAATGGTGGTCCCATTAAACAAGATCTTACTTCTCATGTTGGGCCCATTACTCTCTCGATGTTTGTGAGCACACACTATGCTGGAAAGGAAGTGACAATGGCATTTGAAGAAGGTGAAACTTATAAAAAGGTGTTTGGTCCTGTTTTTGTTTATCTCAACACTGATTCAAGTGCAAATGACAATTCAACCCTTTGGTCAGATGCTGTGCAACAGTTATCCACACAAGTTCAAAGTTGGCCTTATGATTTTCCTCAATCACAAGATTATTTTCCCTCCAATCAAAGAGGAACAGTGCTTGGAAGATTACTAGTTCAAGATAGATACTTCAAAGGAGGGAGATTTCAATATACAAATGCTTATGTTGGTCTAGCTTTGCCTGGAGATGCAGGATCATGGCAGAGAGAAAGCAAGGGTTATCAGTTCTGGACGCGAGCTAACACGAAGGGATACTTCAAAATAAATAATATTGTGCCAGGCAACTATAGTTTGTATGGTTGGGTCTCTGGATTCATTGGTGATTACAAGTTCAATTCTACAATCGCCATCACCTCAGGAGGAGGAGTCGTAAACTTGAATACACTTGTATACAATCCTCCAAGAAACGGACCAACCATTTGGGAAATCGGGTTCCCAGATCGATTGGCTTCAGAATTTCATGTTCCAGACCCTTACCCTACTCTCTTGAACAAGTTATACTCCGAACAGCGTAAAAACAAGTTTCGACAATATGGATTGTGGGAACGTTACAGTGATATATATTCGAATGGTGATCTTGTTTACACTGTTGGTATTGACAAGAATGATGATTGGTTTTATGCTCATGTTACAAAAATAACAGAAAACAAAACATATGAACCAACAACATGGCAAATTATATTTGAACATCAAAATGACATTATCATCGGAAACTATACATTACAACTAGCCTTAGCCAGTGCTGCTGATGCAAATCTACAGGTTCGATTCAACGACGCTAGCGTAGATCCGCCTCATTTTGCGACAGGGCGCATTGGAGGAGACAATGCGATAGCGAGACACGGAATTCATGGATTGTATTGGTTGTTTAGCATTGATGTTCCGAGTAATGTTCTTGTGAAAGGACAAAATGTCATCTATTTGATGCAGTCGAGAGCGATTAATCCTTTTCAAGGAGTTATGTATGATTATATTCGGTTAGAACGGCCCCCGATAACTTGA 2046 0.3827 MMKMMNVLSKKKKQLGVLLQLCFLLCACSEKTLLRGASKNINGLESTTSIVKLNTDDQQQLVVDNGIVSVTLSRPEGYIIQISYNGVDNILETENEEEDRGYFDVYWNRPGKMGNSSRIHGTNFSIISADENKVEISFLRVWTPSMIDTDVPINIDKRYVFRSGDSGFYSYVIFDRPEGMPAVEVDQIRYVYKLNKDMFKYMALSHTRQRSMPSMKDRLTGQTLAYPEAVLLTKPIDPQFRGEVDDKYQYSCENTDNNVHGWASFDSDKPMGFWMITPSNEFRNGGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFEEGETYKKVFGPVFVYLNTDSSANDNSTLWSDAVQQLSTQVQSWPYDFPQSQDYFPSNQRGTVLGRLLVQDRYFKGGRFQYTNAYVGLALPGDAGSWQRESKGYQFWTRANTKGYFKINNIVPGNYSLYGWVSGFIGDYKFNSTIAITSGGGVVNLNTLVYNPPRNGPTIWEIGFPDRLASEFHVPDPYPTLLNKLYSEQRKNKFRQYGLWERYSDIYSNGDLVYTVGIDKNDDWFYAHVTKITENKTYEPTTWQIIFEHQNDIIIGNYTLQLALASAADANLQVRFNDASVDPPHFATGRIGGDNAIARHGIHGLYWLFSIDVPSNVLVKGQNVIYLMQSRAINPFQGVMYDYIRLERPPIT 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00640 681 Pfam Rhamnogalacturonate lyase family 47 244 IPR010325 -
Vivi2g00640 681 Gene3D - 373 475 - -
Vivi2g00640 681 FunFam Rhamnogalacturonate lyase B 374 473 - -
Vivi2g00640 681 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 52 679 - -
Vivi2g00640 681 CDD RGL4_M 377 477 IPR029413 -
Vivi2g00640 681 SUPERFAMILY Galactose mutarotase-like 55 344 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vivi2g00640 681 SUPERFAMILY Galactose-binding domain-like 484 676 IPR008979 -
Vivi2g00640 681 CDD RGL4_C 489 676 - -
Vivi2g00640 681 Gene3D - 484 676 - -
Vivi2g00640 681 CDD RGL4_N 54 343 - -
Vivi2g00640 681 Pfam Polysaccharide lyase family 4, domain III 487 675 IPR029411 -
Vivi2g00640 681 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Vivi2g00640 681 Gene3D - 53 357 IPR014718 GO:0030246
Vivi2g00640 681 Pfam Polysaccharide lyase family 4, domain II 401 469 IPR029413 -
Vivi2g00640 681 SUPERFAMILY Starch-binding domain-like 372 468 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00640 Vivi-Chr2 17505242 17518109 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00640 51 679 Polysaccharide Lyase AT1G09910 53.956 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00640 K18195 - gmx:100776664 1010.36