Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00627 ATGGAGAGATTAGAGAGAAGGAGCAAGAAGGATCAAGATAAGAAAGAAAAGAGAGTAAGAACTTTTGTCGAATTAATAACCGGTAACAATAACAACAATAACAACAACAGCAGCAACAACAACAACAGCAACGGCGTTAAGAAAGAGATTGTTACTGCAAATGACAACAACAATAATGATATGCCAATGTCAATAGGGTCACCAATACCATCACCAAGAGGAGTATTTGAGGTGCCGATATCGGATTCAGACAGCACGGGGAGTGAAAACTACGGCAATTCACAACGGGCGCAACAGGGAGGAAAGTTATCACCAAGTGCAGCAGGAGGAGGAGATGGACATCAATGGAGGAATATGATTGATGCATTGAGGTTTAAGTCTGTGAGAAGATTTTCTACCATTCCTTTGCTTGCTGCTAGCTATGAAAGTTCTAGGAGAAGTTTGAGGAATAAATTGGCTCGTGCAAGAACCGGTAACGACGATGAGAATGATTTCGATGGTGCTCTTGATCTCGAGGGAATTACTAAGCCTTCTTGGAGAAATTTTAGTTACGAAGATCTTGCTGCTGCAACCGATAATTTCAATCCTGAGAACATGATTGGAAAAGGTGGCCATGCAGAAGTGTACAAAGCAAGGTTACCTGATGGACAAGTAGTAGCAGTAAAGAGACTAATGAGGAATGAAAAAGAAGCTGGAGATAAGGCTGGTGATTTCTTATCAGAGCTTGGGATTATTGCTCACATTAACCATCCAAATGCAACAAGACTCATTGGTTTCGGAATCGATCGCGGACTCTACTTTGTTCTACAATTTGCTTCACATGGAAGCCTTTCTTCTATGCTCTTTGGTTCTGAATGTTTGGAATGGAAGAGAAGGTTCAAGGTAGCAGTTGGAGTAGCCAAAGGTTTGCAGTATCTGCATCAAGATTGTCCGAGGAGAATCATTCATAGAGACATCAAAGCCTCAAACATATTACTCAACCATAATGATGAAGCTGAGATTTCAGATTTTGGATTGGCAAAATGGCTTCCAGATAAATGGGCACACCATGTTGTTTTTCCAATAGAAGGCACATTCGGGTATTTAGCTCCAGAGTATTTTATGCATGGACTTGTGGATGAAAAGACTGATGTTTTTGCATTTGGGGTATTGTTACTTGAACTCATGACGGGTCGTCGTGCGGTTGATTCCAATAGCAGGCAAAGTCTTGTAATCTGGGCTAAACCATTATTGGATGCAAAGCAAGTGCAAGAAATAGCAGATCCAAGATTAGAAGAGCAATATGATCCAATTGAAATGAAGATTGCCATGGCAACAGCTTCCATGTGTGTCCACCACATGTCCTCTAAAAGGCCATACATGAATCAGGTTGTGCTACTATTGAAGGGAGAAGAAGTGGCTATGGACCTTACTCAAAAATCAATAGCACCAAGGTCACTCTTGTTAGATGCATGTGATTTAGAAGACTATACTTGTTCAAATTATTTGAATGATCTAAATCGCCACAAGCAATTAATCATGGAGTGA 1527 0.4067 MERLERRSKKDQDKKEKRVRTFVELITGNNNNNNNNSSNNNNSNGVKKEIVTANDNNNNDMPMSIGSPIPSPRGVFEVPISDSDSTGSENYGNSQRAQQGGKLSPSAAGGGDGHQWRNMIDALRFKSVRRFSTIPLLAASYESSRRSLRNKLARARTGNDDENDFDGALDLEGITKPSWRNFSYEDLAAATDNFNPENMIGKGGHAEVYKARLPDGQVVAVKRLMRNEKEAGDKAGDFLSELGIIAHINHPNATRLIGFGIDRGLYFVLQFASHGSLSSMLFGSECLEWKRRFKVAVGVAKGLQYLHQDCPRRIIHRDIKASNILLNHNDEAEISDFGLAKWLPDKWAHHVVFPIEGTFGYLAPEYFMHGLVDEKTDVFAFGVLLLELMTGRRAVDSNSRQSLVIWAKPLLDAKQVQEIADPRLEEQYDPIEMKIAMATASMCVHHMSSKRPYMNQVVLLLKGEEVAMDLTQKSIAPRSLLLDACDLEDYTCSNYLNDLNRHKQLIME 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00627 508 SUPERFAMILY Protein kinase-like (PK-like) 178 464 IPR011009 -
Vivi2g00627 508 Gene3D Transferase(Phosphotransferase) domain 1 273 476 - -
Vivi2g00627 508 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 170 271 - -
Vivi2g00627 508 SMART serkin_6 194 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g00627 508 ProSitePatterns Protein kinases ATP-binding region signature. 200 222 IPR017441 GO:0005524
Vivi2g00627 508 Gene3D Phosphorylase Kinase; domain 1 169 269 - -
Vivi2g00627 508 Pfam Protein kinase domain 197 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g00627 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Vivi2g00627 508 ProSiteProfiles Protein kinase domain profile. 194 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g00627 508 MobiDBLite consensus disorder prediction 81 102 - -
Vivi2g00627 508 MobiDBLite consensus disorder prediction 25 115 - -
Vivi2g00627 508 MobiDBLite consensus disorder prediction 25 65 - -
Vivi2g00627 508 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 273 475 - -
Vivi2g00627 508 PANTHER OS08G0249100 PROTEIN 17 473 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00627 Vivi-Chr2 16819368 16822462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00627 181 484 Trihelix Transcription Factor Family AT1G70460 42.038 9.34e-69 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vivi2g00627 Pkinase 6.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00627 - - tpra:123924518 824.698