Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00625 ATGGATGCTACTCAAACAGAAAAAATATATGTTGCAGTTGGCTATGATGTTCTAGATGGATTTCAAACATTGGATTGGGCCCTCAAAAAATGGAATTCTCATCCTAATATTTCTATTATCATCCTACATGTCAAATACAACCCTTCCAATGATCATGTTTATACACTCCTTGGAAAACTCCCTGCAAAAGGTGCATGCGAAGAGAAACTAGAACGGATACGGAACTATGAGCAAAACATTATCAACAATTTGCTTTCCAAGTATATAGCTTTATGTGACAAAGTTCCTGCTGAAACATTTGAGGTTGAGAAATTTGATAAACCAATGCAAAATCTCACTATAGATTTGATCCTTGGCCTTGGAATAACCAAATTGGTTATTGGATTTTCATTCATGAGGCCTTCCATGAAATCGAAAGACGCCATGAACGGATTGTTCTACGTTCATCAGCACAAGCCGGATTTCTGTGAATTGTTCATTATCTGTGGAGGGAAACAAGTTTCGCCGAGAGTGAAAAACGATGAGATAACCATGGAGGACGATAGTGGCGTCAAGGTTGCCAAAATGAGAGATTATAAGATGAATTTTAAAGATTGTATAGCGAGAATTTTCTGTGATAAAACTATTGATTCCAACCAAGGGTGTTCTAGTTCTAGCAGATCATCGACAAGTTCGGAGTCTCAGATTGATCAAAACGAGTGGGAATTTTATATCCGAGAAATCGATAATTATTTTCAAGAGTTACTATCCTTAAACACGGACGAAGGAGTTTGTGGACAAGACAATGATGATGATTCTTACTTTAGTCCAATTGAGCCATTTGTACAACAACTTAAAAATTCTGATAATAAGAGTGGTGCAGAGAAATTTAAGATCTTGACAGATAAACTGAATGAAGCTTATAATACAATCCAAATGAAGAGAAAAGAAGAAAAGGAGAATTTGGAGAGGCATGCAAAAGCTGAATGGGCTATTTATATATCCAATCTTCGGGAAGAAGAACTTGAATATCTAATAAGTGAAGAAATGGCAAGAAAGGAAGAGCTAAAGAAGGAACTAAATACAGAAAAAGAACAAATTCAAAAAATCAGAACGAATATTGAAGATACCGAGCAAAGTCTTAGCTCAATGGAAGAGCTACAACTGGAGCTTCAAAGTAAACTTCATGATTCCGCATTGGAAATTTCAGAATGTGAAACCGAATTCGAGAACGTAATGGCTGAAAGAACAAAGATGTTAATGGAAATAGAGGAGCTAAGTAGACAAAGAGATGTGTTGAACAAAAGGATTATGTTTTTCAAAGAAAATGATGACAAAGGAATATGCAATAAGCTAAAAGAGAAGAGTTGTTGCTTAGAAGAGTACACAGAGGAAGAGATCATCATAGCTACCAACAATTTTTCGGAATACTTGAGGTTGAAATCTGGTAGGGATTGGAGTAATGTTTATAGAGGAAACATTAATAATTCTAATGTTGCAATCAAGATGATTGATTCTACTCTTGCCTTGTCCCAACAAGATTTCCTAACTAAGTTGGTTTCTCTTGGTGATATTCGGCATCCTCATCTGGTTGCTGTATTGGGCTTCTGTTCGGACCCGAAATGCTTAGTTTTCGAATACATGGACAACGGCGCCTTGGAAGAAGCCCTAATTTGCAAGAGAAGAAGGGCCATAAGCTATCAAGATTGCATAAGGATAGCCATAGAAGTTTGCTCAGGGATAGGCTTTGTCAATACACTTCAGCTCAGGTCCATCATACACTGTCACATTTCTGCATCCAACATCCTCCTAGACAAAAACCTTGTTGCAAGGGTGGCAGGGTTCGAGCTTCATGGCTGCAACGAAGAATGTAATGTCGAGTCGGATATGAAGGCAATAGGGGTTTTGTTGTTGCATCTATTGACTGGAAGAGGAAATTGGGTGACAATCGATACAGAAGCTTTTTTCGATGAGATTGGTGATGAATGGCCATTTGATGTTGCAAGAGAACTTTTGGACTTAGCAATAAGGTGCGTTTCCAATGAAGAAATGAGCATAACAAGAGTTATGAAAGAACTCAATGCGATCAAAGGAAAGGGTTGTGACTCCATTAAAGTTCCCAACATTTTCCTTTGTCCAATCCTTCAGAAAATAATGAGGAATCCGCACATTGCAGCAGATGGATATTCATATGAGCTAGAAGCAATAGAAGAGTGGTTGGATTCTGGAAATGAAATATCGCCTAAGAGCTTGAGGCTCGACAACTCGTTACTTTTCCCTAATCATAACCTTCGTTCTCTAATACAGTACTGGCATAGTAACAGATCAGCTACAAAAAAACGAATTATCTATTAA 2334 0.3762 MDATQTEKIYVAVGYDVLDGFQTLDWALKKWNSHPNISIIILHVKYNPSNDHVYTLLGKLPAKGACEEKLERIRNYEQNIINNLLSKYIALCDKVPAETFEVEKFDKPMQNLTIDLILGLGITKLVIGFSFMRPSMKSKDAMNGLFYVHQHKPDFCELFIICGGKQVSPRVKNDEITMEDDSGVKVAKMRDYKMNFKDCIARIFCDKTIDSNQGCSSSSRSSTSSESQIDQNEWEFYIREIDNYFQELLSLNTDEGVCGQDNDDDSYFSPIEPFVQQLKNSDNKSGAEKFKILTDKLNEAYNTIQMKRKEEKENLERHAKAEWAIYISNLREEELEYLISEEMARKEELKKELNTEKEQIQKIRTNIEDTEQSLSSMEELQLELQSKLHDSALEISECETEFENVMAERTKMLMEIEELSRQRDVLNKRIMFFKENDDKGICNKLKEKSCCLEEYTEEEIIIATNNFSEYLRLKSGRDWSNVYRGNINNSNVAIKMIDSTLALSQQDFLTKLVSLGDIRHPHLVAVLGFCSDPKCLVFEYMDNGALEEALICKRRRAISYQDCIRIAIEVCSGIGFVNTLQLRSIIHCHISASNILLDKNLVARVAGFELHGCNEECNVESDMKAIGVLLLHLLTGRGNWVTIDTEAFFDEIGDEWPFDVARELLDLAIRCVSNEEMSITRVMKELNAIKGKGCDSIKVPNIFLCPILQKIMRNPHIAADGYSYELEAIEEWLDSGNEISPKSLRLDNSLLFPNHNLRSLIQYWHSNRSATKKRIIY 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00625 777 ProSiteProfiles U-box domain profile. 698 771 IPR003613 GO:0004842|GO:0016567
Vivi2g00625 777 Coils Coil 402 436 - -
Vivi2g00625 777 PANTHER OS02G0152300 PROTEIN 9 762 - -
Vivi2g00625 777 Pfam U-box domain 699 768 IPR003613 GO:0004842|GO:0016567
Vivi2g00625 777 Pfam Protein tyrosine and serine/threonine kinase 480 611 IPR001245 GO:0004672|GO:0006468
Vivi2g00625 777 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 697 774 IPR013083 -
Vivi2g00625 777 Coils Coil 332 387 - -
Vivi2g00625 777 SMART Ubox_2 702 764 IPR003613 GO:0004842|GO:0016567
Vivi2g00625 777 Gene3D Transferase(Phosphotransferase) domain 1 545 686 - -
Vivi2g00625 777 CDD RING-Ubox_WDSUB1-like 700 754 - -
Vivi2g00625 777 SUPERFAMILY RING/U-box 695 769 - -
Vivi2g00625 777 ProSiteProfiles Protein kinase domain profile. 456 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g00625 777 SUPERFAMILY Protein kinase-like (PK-like) 458 673 IPR011009 -
Vivi2g00625 777 Gene3D Phosphorylase Kinase; domain 1 439 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00625 Vivi-Chr2 16802097 16805768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00625 3 770 U-box Gene Family AT5G65500 41.523 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vivi2g00625 PK_Tyr_Ser-Thr 1.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00625 - - gmx:100795815 923.694