Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00597 ATGTCAGTGCTTATGGTGACGAGTTTAGGGGACCTGGTTATCGATTTGCATACCTATAAGTGTCCCTTAACCTGCAAGAACTTCTTGAAGCTTTGCAAGATTAAATACTACAATGGCTGTCTATTTCACACCGTTCAAAAGGATTTTACTGCACAGACCGGTGATCCAACTGGAATCGGCACCGCTGGCGATTCTATCTTCAAGTTCCTTTATGGTGATCAAGCTTGGTTTTTCAATGACGAGATTCATATTGATCTAAAGCATTCCAAGACTGGAACTGTTGCCATGGCAAATGCTGGAGAGAATATGAATGCTTCACAGTTCTATATAACTCTACGTGATGACCTTGATTACCTTGATGGAAAGCACACTGTATTTGGCAAGGTAGTTGAAGGATTTGAGACTTTGACTAGAATAAATGAGGCTTATGCAGATGGAAAGGGAAGACCATTTAAAAATATTAGGATCAAGCATACTTACATCCTTGAGGATCCTTATGATGATCCTCCTCAGCTACCTGAGTTTATTCCTGAAGCTTCACCTGAGGGAAAACCTAAGGACGAGGTTGATGATGAAGTCAGGCTTGAAGATGATTGGGTGCCTATGGATGAACAATTAAACCCAGGAGAGCTGGAAGAGGTTATTAGATCAAAGGAAGCACATTCTAGGGCAGTTGTGCTTGAGAGTATTGGGGATATTCCTGATGCTGAGGTTAAGCCTCCAGACAATGTACTATTTGTCTCTAAAATGAATCCGGTGATCGAGGATGAGGACTTGCATACAATATTTTCTCGCTTTGGAACTGTATCATCGGCTGAAATCATCCGTGATCAAAATAGTGGTGACAGTTTATGCTATGCTTTTATAGAGTTTGAAGACAAACATGCATGTGAGCAGGCATATTTCAAGATGGATAATGCTTTGATTGACGATCAAAGAATACATGTAGATTTTAGTCGAAATGTTGCAAAACTGTGGTCACAATACAACAGGAAAGATAATAAGGCTGGTGGTTGCTTCAAATGTGGTTCCACAGATCATATTGCTAAGGATTGCACTGGAGATGCTACGGTGAAACAACCCACAAAATATATCTTGAAGGACAATAATGCCCAACGTGGTGGACAAAATATAAGAAATGGTTTTTGA 1149 0.4021 MSVLMVTSLGDLVIDLHTYKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGIGTAGDSIFKFLYGDQAWFFNDEIHIDLKHSKTGTVAMANAGENMNASQFYITLRDDLDYLDGKHTVFGKVVEGFETLTRINEAYADGKGRPFKNIRIKHTYILEDPYDDPPQLPEFIPEASPEGKPKDEVDDEVRLEDDWVPMDEQLNPGELEEVIRSKEAHSRAVVLESIGDIPDAEVKPPDNVLFVSKMNPVIEDEDLHTIFSRFGTVSSAEIIRDQNSGDSLCYAFIEFEDKHACEQAYFKMDNALIDDQRIHVDFSRNVAKLWSQYNRKDNKAGGCFKCGSTDHIAKDCTGDATVKQPTKYILKDNNAQRGGQNIRNGF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00597 382 ProSiteProfiles Zinc finger CCHC-type profile. 339 352 IPR001878 GO:0003676|GO:0008270
Vivi2g00597 382 FunFam Peptidyl-prolyl cis-trans isomerase 182 323 - -
Vivi2g00597 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Vivi2g00597 382 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 377 IPR035542 -
Vivi2g00597 382 SUPERFAMILY RNA-binding domain, RBD 229 333 IPR035979 GO:0003676
Vivi2g00597 382 Gene3D - 321 371 - -
Vivi2g00597 382 Gene3D - 180 320 IPR012677 -
Vivi2g00597 382 CDD cyclophilin_RRM 4 169 IPR035538 -
Vivi2g00597 382 Gene3D - 1 172 IPR029000 -
Vivi2g00597 382 FunFam Peptidyl-prolyl cis-trans isomerase 1 172 - -
Vivi2g00597 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Vivi2g00597 382 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 159 IPR002130 GO:0000413|GO:0003755
Vivi2g00597 382 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Vivi2g00597 382 SMART rrm1_1 244 317 IPR000504 GO:0003723
Vivi2g00597 382 Pfam Zinc knuckle 338 353 IPR001878 GO:0003676|GO:0008270
Vivi2g00597 382 CDD RRM_PPIL4 240 322 - -
Vivi2g00597 382 SUPERFAMILY Retrovirus zinc finger-like domains 325 354 IPR036875 GO:0003676|GO:0008270
Vivi2g00597 382 SUPERFAMILY Cyclophilin-like 1 176 IPR029000 -
Vivi2g00597 382 SMART c2hcfinal6 338 354 IPR001878 GO:0003676|GO:0008270
Vivi2g00597 382 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Vivi2g00597 382 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Vivi2g00597 382 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Vivi2g00597 382 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00597 Vivi-Chr2 16283918 16288369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00597 3 166 U-box Gene Family AT5G67530 41.463 7.36e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00597 K12735 - gmx:100776900 685.256