Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00578 ATGGAACAATCACTTCAACGCTTCAACGGAATATCTCCGACGGAGGAACCAGAAAACCACCGCCGCCACAAAAAAACCCCATCCTCCGCCGTACCAACAAACAAAGCCGGCAGCTCAATACGATACCGCGGAGTCCGACGCCGACCATGGGGCCGTTACGCAGCCGAAATAAGAGATCCACACTCCAAAGAACGCCGCTGGCTTGGTACCTTCGATACTGCCGAGCAAGCCGCCTGTGCCTACGACTGCGCCGCCATATCCATGCGCGGTTCTAAAGCTAGAACCAATTTCTTTAACCCCGAAACCGAAACCACCGAACATCATCATCTTCATCATCATCAACAACAGCAACATTGTCTTTTTCATTCTTTCAATGTTTCAAAACAGCAACAATCTCAACACCGCCACGTCAGCAAGTTCAACGGTGTTGATTATCTTAACCAACACTTTCATAGCAAAACCATTAACAGTACTATTTCTTCTTCAGCTTCAGCTTCAGTTTCTACAGATTCAGATAATGTTACTACTGAAAACATTATCGATGATGATGATGCTGACTCGGATTTTTTTCCGAGAGAATCATCTGGTTTGTTGGAAGAGATTGTTCATAAGTTTATGAAAAGTTCGAAAACAACAAATAGTGAAAAGAAGATGAAAACTGAAACTTTTGCAGGTTCAGTTTCTCAACCAATACTATCTCATTCTCATCATCATAACATGCTTCCTGATAATGAGAGTTTTGGTTATGTTTCTTTTGATCAACAACATCAAGGTTTTCCAATGCAACAGTTTGAGAGTTTTGATAATGGGTTTAACTTTAACAACAATGTGGCTATGTGTGTTGAGGGAAATAGTTATCATGCAGCAGAGTGTTCTATAATGGATGATGTGTTTTACTATCCTGAACTTTTTCATTCTTTTGCTACTAGGATTCAAAATCCCTCAGCTGATTTACCTTTTGACACAGAACCAGAGAGGACTTTACGAGCAAGACTCCGAAGAGCTAAGCAAGAAAGACTGGCAGCATCCGAAGGAAATCCAACAATACCAGAAATAGAGGAAGAGGTTTCGGTTCATCCAGAGCATTCCGATTCAGACGCCGAGACAATTCCTGAGACAATGGCAGCTAATCCACCCCCACCAGTCGAGAGGCTTCTTGGTGACTATGGTGGAAATAATGCACCGGCTGGTAGAATGGCAATTGTGAACCAACCGGTGAATGCGGCACACTTTCAGCTGTATCCCAGCACTATCATTTAA 1260 0.4294 MEQSLQRFNGISPTEEPENHRRHKKTPSSAVPTNKAGSSIRYRGVRRRPWGRYAAEIRDPHSKERRWLGTFDTAEQAACAYDCAAISMRGSKARTNFFNPETETTEHHHLHHHQQQQHCLFHSFNVSKQQQSQHRHVSKFNGVDYLNQHFHSKTINSTISSSASASVSTDSDNVTTENIIDDDDADSDFFPRESSGLLEEIVHKFMKSSKTTNSEKKMKTETFAGSVSQPILSHSHHHNMLPDNESFGYVSFDQQHQGFPMQQFESFDNGFNFNNNVAMCVEGNSYHAAECSIMDDVFYYPELFHSFATRIQNPSADLPFDTEPERTLRARLRRAKQERLAASEGNPTIPEIEEEVSVHPEHSDSDAETIPETMAANPPPPVERLLGDYGGNNAPAGRMAIVNQPVNAAHFQLYPSTII 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00578 419 FunFam Ethylene-responsive transcription factor 2 41 99 - -
Vivi2g00578 419 Pfam AP2 domain 41 90 IPR001471 GO:0003700|GO:0006355
Vivi2g00578 419 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Vivi2g00578 419 MobiDBLite consensus disorder prediction 161 175 - -
Vivi2g00578 419 Gene3D AP2/ERF domain 40 99 IPR036955 GO:0003700|GO:0006355
Vivi2g00578 419 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Vivi2g00578 419 MobiDBLite consensus disorder prediction 338 377 - -
Vivi2g00578 419 MobiDBLite consensus disorder prediction 1 43 - -
Vivi2g00578 419 CDD AP2 41 97 IPR001471 GO:0003700|GO:0006355
Vivi2g00578 419 SUPERFAMILY DNA-binding domain 41 97 IPR016177 GO:0003677
Vivi2g00578 419 MobiDBLite consensus disorder prediction 161 181 - -
Vivi2g00578 419 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 25 194 - -
Vivi2g00578 419 MobiDBLite consensus disorder prediction 354 368 - -
Vivi2g00578 419 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Vivi2g00578 419 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00578 Vivi-Chr2 15341943 15347414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00578 13 210 AP2-EREBP Transcription Factor Family AT1G12980 38.889 2.31e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi2g00578 AP2 1.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00578 - - vvo:131648624 780.4