Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00572 ATGAGTAGCACTGACCCCTACGGTTTCCCGGAGGATCTCCGCCGTATGATATCATCAAGAACCACCACCACCACTGAACCACCACCACCACAACCACCACCCTATAATCTCTATGCTTCTGCTTTTCATCCTCCTAATAATTATTCCTATGACCCTTCCTCTATCATCGTTGGTGATGTTTTCTATCCTCGTAGTGCCTTCCCTCACCACAACCACTATGATTATTCCTCCTCCACTCTCAACATTCCTTCAACTAGCTCCACCACTATTCCTCCTGCAAATCCTAATTCAGATCATGCTACTGCTTCTGCTGCTTTCTTTGTTGGCTTAGAAACAAACTCTGCTGATAACAAAGAATGGCTTGGTAACTTTGATTCTTGTAACAATAGATGGCCTAGACAAGAAACACTTTCTCTTCTAGAAATCAGATCTCGTCTTGATTCTAAGTTCAAGGAGAATAATCAGAAAGCACCCTTGTGGAATGAAATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAGGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAAACAAAGGAAGGTAAGGCTAGTAGACAAGATGGTAAACACTACAGATTCTTTAGGCAGCTTGAAGCAATATGTGGAGAATCAAATACAAGCACTCATGCTTCAGTTTCAGACAAAACACCTCATGCTGCTTTTGTTGCTACTACTCAAACTCCAAGCTTCACAATGAATCAAGAAAATGTTAATGGTGTTGAGGATCATAGTTTGATTAATAGCCTTAAGTATAAATCAGATAGCTTAATGAGTTTCTCGAATTCGTCTGAGTTTGAGACATCCTCGTCGGAAAACAACGATGAGGATCTCTCGGCTATTGCGCACTCGATGAGGTCGTCGTGGAAGCAGAAAGGGATAGAGTTAGAGAAAGGTGATAGGAGGGTGAGAAAAAGTTGGAGAGGTAAAGTGGAGGAGATTGTGGATTCTCACATGAAGAAGATTATAGAGACACAAGATGCATGGATGGAGAGAATGTTGAGTGTTGTTGAACAAAGGGAACAAGAGATGGCATCAAAGGAAGAAGAAAGGAAGAGAAAAGAGTCAATGAGGTTTGATCAAGAGATACATAAACTTTGGGCTAAAGAAAAAGCTTGGGTTGAAGCAAGAGATGCTGCATTGTTAGAAGTTGTGAGAAAACATATTGGGATAGAAGGAACAAATAACAAGAATGAAAATGGTAGAAACTATGAATACCCTTTTGAGAGTTTGGAGAATCATAGGTGGACAGAAATGGAGATTTCAAGTTTGATACAATTAAGGACTAGTTATGAAGATCAAGTAAGAGAAAAAGGGTATTTGGAAGATGGTGCCTGGGATGACATAGGTGAGAAAATGGTGTATATGGGATTCAACAGAAATGGAGCAGAATGCAAGAAAATATGGGATGAGATTAGTGTGTCCCTTAGAAGGACAGTGGACTGTGGAGTCAAAATCACAAGACCTTGGTGTTTGGGACTTAAGGTGACAGATGATGACGACATTTGA 1554 0.4015 MSSTDPYGFPEDLRRMISSRTTTTTEPPPPQPPPYNLYASAFHPPNNYSYDPSSIIVGDVFYPRSAFPHHNHYDYSSSTLNIPSTSSTTIPPANPNSDHATASAAFFVGLETNSADNKEWLGNFDSCNNRWPRQETLSLLEIRSRLDSKFKENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGESNTSTHASVSDKTPHAAFVATTQTPSFTMNQENVNGVEDHSLINSLKYKSDSLMSFSNSSEFETSSSENNDEDLSAIAHSMRSSWKQKGIELEKGDRRVRKSWRGKVEEIVDSHMKKIIETQDAWMERMLSVVEQREQEMASKEEERKRKESMRFDQEIHKLWAKEKAWVEARDAALLEVVRKHIGIEGTNNKNENGRNYEYPFESLENHRWTEMEISSLIQLRTSYEDQVREKGYLEDGAWDDIGEKMVYMGFNRNGAECKKIWDEISVSLRRTVDCGVKITRPWCLGLKVTDDDDI 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00572 517 Gene3D - 131 193 - -
Vivi2g00572 517 Gene3D - 431 493 - -
Vivi2g00572 517 MobiDBLite consensus disorder prediction 1 33 - -
Vivi2g00572 517 PANTHER FI21293P1 97 498 - -
Vivi2g00572 517 Coils Coil 345 372 - -
Vivi2g00572 517 CDD GT1 129 195 - -
Vivi2g00572 517 Pfam Myb/SANT-like DNA-binding domain 429 496 IPR044822 -
Vivi2g00572 517 Pfam Myb/SANT-like DNA-binding domain 129 216 IPR044822 -
Vivi2g00572 517 ProSiteProfiles Myb-like domain profile. 423 488 IPR001005 -
Vivi2g00572 517 SMART sant 427 490 IPR001005 -
Vivi2g00572 517 SMART sant 127 190 IPR001005 -
Vivi2g00572 517 FunFam trihelix transcription factor PTL-like 131 193 - -
Vivi2g00572 517 ProSiteProfiles Myb-like domain profile. 129 188 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00572 Vivi-Chr2 14935407 14938050 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00572 130 493 Trihelix Transcription Factor Family AT5G03680 42.643 8.20e-84 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi2g00572 Myb_DNA-bind_4 7.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00572 - - lang:109336385 540.036