Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00562 ATGTCAAACCTTTCCAATGGAATAGATTTGAATGAGAACAAAGAGAGAACATCAGAAGCAGAAAAAGAGTTAGAAGATGAAGAAAGTTTCTCACATGCAATACAACTTTGCAGCTCTACTGTGCTACCAATGGCTCTTCAATCTGCAACCGAGCTTGGTGTTTTCGACGTGTTGCTAAAAGCTGGTAACGATGCTCAACTCTCCGCCCATGAGATAGCGTCTCGTCTCACATATGAAGAAAAGCTTGGATCGTTTAGTAGACTTTATAGTATGGCTCCTGTTGCAAGATTCTTCGCTCGTGATTCCGACGGTGTTTCGTTAGGACCCTTATTGTCTTTGATTCAAGATAAAGTCTTCTTAGCTAGTTGGTCTGAGCTTAAGAATGCGATTCGAGAAGGGGGTGTACCATTCGACAGAGTTTATGGCACACATGCTTTTGATTATCCAAGTTTGGACACGAGGTTTAACCAAGTTTTCAACACAGGTATGATCAATCATACCAAAGTAGTTATGAAGAAGATTCTTGAATGCTACAAAGGTTTTGATAATGTAAAAAAGCTTGTGGATGTTGGAGGTGGTCTTGGGGTCAACATTAACTCAGTCACTTCCAAATACCCTCATATTAAGGGTATTAATTTCGACTTGCCTCATGTCATAGAACATGCTCCTTCTTATCCAGGAGTTGAACATATTGGTGGAGATATGTTTGAAAGTGTGCCTAAAGGAGATGCTATCTTTATGAAGTGGATACTTCATGATTGGAGCGATGAGCATTGCTTAAAGCTTTTGAAGAATTGTTATGATGCTATTCCTGATGATGGAAAGGTGATTGTTTTGGAGGCACTTCTTCCTATTATACCTAAAAATGGATATGGTTCCAAGTGTATCTCTCAATTGGATGTTTTGATGATGACTCTAAATCCAGGTGGAAAAGAACGAAGTAAGCAAGAATTTGAAGATTTGGCAACAAGAGTTGGATTTAGTGGCATCAAATATGAATGTTGTGTTCGTAACTTTTGGATTATGGAGTTTTTTAAATAA 1041 0.3852 MSNLSNGIDLNENKERTSEAEKELEDEESFSHAIQLCSSTVLPMALQSATELGVFDVLLKAGNDAQLSAHEIASRLTYEEKLGSFSRLYSMAPVARFFARDSDGVSLGPLLSLIQDKVFLASWSELKNAIREGGVPFDRVYGTHAFDYPSLDTRFNQVFNTGMINHTKVVMKKILECYKGFDNVKKLVDVGGGLGVNINSVTSKYPHIKGINFDLPHVIEHAPSYPGVEHIGGDMFESVPKGDAIFMKWILHDWSDEHCLKLLKNCYDAIPDDGKVIVLEALLPIIPKNGYGSKCISQLDVLMMTLNPGGKERSKQEFEDLATRVGFSGIKYECCVRNFWIMEFFK 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00562 346 SUPERFAMILY "Winged helix" DNA-binding domain 25 101 IPR036390 -
Vivi2g00562 346 Gene3D Vaccinia Virus protein VP39 99 346 IPR029063 -
Vivi2g00562 346 FunFam Caffeic acid O-methyltransferase 99 346 - -
Vivi2g00562 346 PIRSF O-mtase 76 346 IPR016461 GO:0008168
Vivi2g00562 346 PIRSF O-mtase 10 83 IPR016461 GO:0008168
Vivi2g00562 346 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 103 344 IPR029063 -
Vivi2g00562 346 PANTHER O-METHYLTRANSFERASE 36 331 IPR016461 GO:0008168
Vivi2g00562 346 Pfam Dimerisation domain 44 80 IPR012967 GO:0046983
Vivi2g00562 346 Gene3D - 10 82 IPR036388 -
Vivi2g00562 346 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 346 IPR016461 GO:0008168
Vivi2g00562 346 Pfam O-methyltransferase domain 123 328 IPR001077 GO:0008171
Vivi2g00562 346 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00562 Vivi-Chr2 14511620 14513905 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00562 23 346 Monolignol Biosynthesis Gene Families AT5G54160 49.003 2.00e-123 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00562 K13066 - gmx:100803633 510.375