LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g00558	ATGGCTCCTAGATTCTATTCTCTTACACTCTTCTTCTTGTCCTTAATTTTCTTCACTTTCCCTGTTAATTCAATTCACTTCAAATTTTCCCGTTTTGATCCTAGTGACACCAACTTAGTCTACCAAGGTTCTGCAGCACCAAGTGATAGACTAGTTAACTTTAACATCAATGAATTATATACATGTCAAACCGGAAGAGTCTTCTATTCTGAAAAAGTGTTAATTTGGAACTCAAAAACAGGCCAACTCACTGACTTCACAACTCATTACACCTTTATCATAGACACTCAAAATAGGTCTTCATATGGCCATGGACTTGCCTTTTTCTTGGTTCCTTTTCGTTTCGAAATCCCACTCAATTCTGATGGTGGATTTATGGGCCTATTTAATACAACAACAATGGACTCACCTAGTAATCAAATTGTTCATGTGGAGTTTGATTCTCGCGCAAATGGTGAATGGGGTGAGACAACGGAGCATGTGGGAATCAACAATAATTCGATCATATCATCAACCTCAACATATTGGAATGCGAGCGTGCATAGTGGAGATAATGTTGATGTAACTATTAGCTATAATTCTACAACCAAGAATTTGACTGTATCGTGGAGATATCAAAGTACTTACGATCCTCAAGAAAAAACTAGTCTTTCATATCAAATCGATTTGATGAAGGCTTTGCCCGAATGGGTAACTATAGGATTTTCTGCTGCAACAAGTTATGTTGGAGAAATAAATCATCTTTTGTCATGGGAATTTAACTCCACTCTGGACGACAATGAGGATAGTAATACAGAAGAAACGAGACTAATTGTAATAATAACAATCTCTTGTGGGGTTGCAATAGTAGTGGGAGCATTGGTAGCATATGTAGTAATCAAGAGGAAAAGAAAGATTATTGAAAAGAAAAAAGATGAGGCTATGCATTTAACTTCAATGAATGATGACCTTGAACGAGGAGCAGGGCCGAGAAGGTTCATCTACAAGGAACTTGATATTGCCACCAATAACTTCTCTGTGGATAGAAAGTTGGGCCAAGGTGGTTTTGGAGCTGTTTATAGAGGTTATTTTGCTGATTTAGATTTGCATGTTGCTGTGAAGAAAATATCAAGAGGATCAAAACAAGGTAAGAAAGAGTATGTAACTGAAGTTAAAGTGATTAGCCAACTTCGACATAGGAATCTTGTGAAGTTGTTGGGTTGGTGTCATGACAAAGGTGAGTTTCTTCTTGTTTATGAGTTCATGACTAATGGTAGCCTTGATTATCATTTGTTTGGTAAAAGGATGCCACTTTCTTGGAGTGCAAGGCACAAAATAGCTCTCGGGTTGGCGTCTAGTGTGTTTTATCTACACGAAGAATGGGAGAGGTGTGTGATACATAGAGACATCAAATCAAGTAATGTTATGTTAGATTCTAGTTTCAATGTCAAGCTTGGTGATTTTGGGTTGGCGAAACTAATGGATCATGAGCTTGGGCCTCAGACAACTGGTATAGCCGGAACATTAGGCTATCTAGCTCCAGAGTACGTGAGTACTGGACGGGCCAGCAAAGAGTCAGATGTGTATAGTTTTGGTATAGTTGCTTTGGAGATCACCACTGGAAAGAAAGCTGTTCAAGTTATGAAAGACAAAGATGGAGGAGATAAGGGAATGATTGAGTGGGTTTGGGATCATTATGGAAGAGGAGAGCTACTTATGGCAATGGATGAGAATTTGAGAAAGGATTTTGATGAGAAAGAAGTAGAGTGTTTGATGATTGTTGGATTATGGTGTGCACATCCTGATGTGAATCTAAGACCATCCATTAGACAAGCAATTCAAGTGCTTAATTTTGAGGTTTTGATGCCAAATCTTTCTCCAAAGAGGCCAGTTGCAACCTATCATGCTCCTGCGTTGGATGTAACCTCAGTACAAGCTTCTATCACCACAAGCCTTCAAGATGGTCGTTAA	1950	0.3872	MAPRFYSLTLFFLSLIFFTFPVNSIHFKFSRFDPSDTNLVYQGSAAPSDRLVNFNINELYTCQTGRVFYSEKVLIWNSKTGQLTDFTTHYTFIIDTQNRSSYGHGLAFFLVPFRFEIPLNSDGGFMGLFNTTTMDSPSNQIVHVEFDSRANGEWGETTEHVGINNNSIISSTSTYWNASVHSGDNVDVTISYNSTTKNLTVSWRYQSTYDPQEKTSLSYQIDLMKALPEWVTIGFSAATSYVGEINHLLSWEFNSTLDDNEDSNTEETRLIVIITISCGVAIVVGALVAYVVIKRKRKIIEKKKDEAMHLTSMNDDLERGAGPRRFIYKELDIATNNFSVDRKLGQGGFGAVYRGYFADLDLHVAVKKISRGSKQGKKEYVTEVKVISQLRHRNLVKLLGWCHDKGEFLLVYEFMTNGSLDYHLFGKRMPLSWSARHKIALGLASSVFYLHEEWERCVIHRDIKSSNVMLDSSFNVKLGDFGLAKLMDHELGPQTTGIAGTLGYLAPEYVSTGRASKESDVYSFGIVALEITTGKKAVQVMKDKDGGDKGMIEWVWDHYGRGELLMAMDENLRKDFDEKEVECLMIVGLWCAHPDVNLRPSIRQAIQVLNFEVLMPNLSPKRPVATYHAPALDVTSVQASITTSLQDGR	649

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g00558	649	SUPERFAMILY	Protein kinase-like (PK-like)	322	622	IPR011009	-
	Vivi2g00558	649	Gene3D	-	22	281	-	-
	Vivi2g00558	649	Gene3D	Phosphorylase Kinase; domain 1	323	414	-	-
	Vivi2g00558	649	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	458	470	IPR008271	GO:0004672\|GO:0006468
	Vivi2g00558	649	FunFam	L-type lectin-domain containing receptor kinase IX.1	23	266	-	-
	Vivi2g00558	649	CDD	STKc_IRAK	344	610	-	-
	Vivi2g00558	649	Gene3D	Transferase(Phosphotransferase) domain 1	415	630	-	-
	Vivi2g00558	649	ProSiteProfiles	Protein kinase domain profile.	338	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g00558	649	CDD	lectin_legume_LecRK_Arcelin_ConA	25	257	IPR001220	GO:0030246
	Vivi2g00558	649	SMART	serkin_6	338	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g00558	649	SUPERFAMILY	Concanavalin A-like lectins/glucanases	23	264	IPR013320	-
	Vivi2g00558	649	PANTHER	-	53	611	-	-
	Vivi2g00558	649	FunFam	Lectin-domain containing receptor kinase A4.3	415	629	-	-
	Vivi2g00558	649	Pfam	Protein kinase domain	339	607	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g00558	649	ProSitePatterns	Legume lectins alpha-chain signature.	227	236	IPR000985	-
	Vivi2g00558	649	ProSitePatterns	Protein kinases ATP-binding region signature.	344	368	IPR017441	GO:0005524
	Vivi2g00558	649	Pfam	Legume lectin domain	25	267	IPR001220	GO:0030246
	Vivi2g00558	649	FunFam	L-type lectin-domain containing receptor kinase IX.1	323	414	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g00558	Vivi-Chr2	14446481	14448768	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g00558	14	628	Receptor kinase-like Gene Family	AT5G10530	56.640	0.0	715

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vivi2g00558		Pkinase	5e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g00558	-		-	qsa:O6P43_033286	835.869