Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00546 ATGGTACTATTGAAGTGTGACATGAACAATTTCATCATGCAAAACTTTAGTGAGAGATTAAGACCTCTTGTTGGTTTGAATGGTTGGGACTATTGTGTTTACTGGAAATTAAGTGAAGATCAAAGGTTTCTCGAATGGTTGGGATGTTGTTGTGGAGGAAGTGAAAGCAATCAAAACGGCGGTAGAGAAGAACATATTTTCGCGATATCTTCATGTAGGGATACAATGTTTTCGCATCCAAGAACAAATTCTTGTGATCTACTTTCACAACTTAACACTTCCATTACTACAGATTCGGGGATTCATGCACAAACTCTATTAACAAACCAACCTAGTTGGTTGAACTATCCTAACACCTTGGATCCAAACACTCTACAAGAAACAATTAATGGGACACATGTTTTGATTCCTGTGCCTGGTGGACTAGTTGAGCTCTTTGTAACTAAACAAGTTGGTGAAGATCAACAGGTGATAGATTTCATCACATCTCAGTGTATTGTCATGGTGGATCAAGAAGGGATGATGAACAACTCAATGAGCAACATGCAATCAAATCAAGCTATAGTCGACGAAATCGACGGAGATAAAACAAGCAATCATTTTCATGCACCAGAGACATTGAATCTTCCACATGACATGTCTGTAATGAACTTCATGCAACAGTTCAATTACAGTTACAATTACAATCAGCAACAAAACCGAATCAAAAACGACGAAACATTCTCCGAAGAATACCAAGGTTCATTCCTTCATGATCTCGAAAACAACAACAACAATAACAACAGCAGCAGCATTCTCAAATCTAACACAGAAGAGGAACATGATAACAAAAGCCTAATGACAGATAATAACCAGTATATGTTTGTCGATCCATTAGACTCGAAAAGAAAACACGAACAAGCTGTTGGTAGATCGGAGTCTATGTCTGATTGCAGTGATCAGAATGAAGAAGAGGATGATGGAAAGTTCAGAAGAAGAAACGGAAAAGGAAACCAGTCAAAGAATCTCGTCGCCGAGAGAAAAAGAAGGAAGAAACTGAATGATAGGTTGTATAATCTTCGCTCGTTGGTTCCGAGAATTTCAAAGCTTGATAGAGCTTCAATTCTTGGTGATGCTATTGAGTTTGTGAAGGATTTGCAGAAGCAAGTGAAAGAGCTTCAAGATGAACTTGAGGAAAATTCAGATACAGGCACTGAAAGTAACTGCATTGTTAATGGAAATAATAATCAATATAACGGCGGTGTTCAAACTCAACTAGAAGATAACACAAATAATGTTCCAAAAGAAGAACATGGTTTTCATGTTGGGAATGGCTATGTTTCAAAACAAAAGCAGGAAGATGTAGGTACTGGTACTGACAAACAGACACAACAAATGGAGCCACAAGTGGAAGTGGCATTGATAGATGGGAATGAGTATTTTCTGAAGGTGTTCTGTGAGCATAGGCCTGGTGGATTTGTGAGATTGATGGAAGCATTCAACACTTTAGGCATGGATGTAATGCATGCCACAGTAACAAGCCATAAAGGTCTTGTGTCAAATGTTTTCAAAGTTGAGAAAAAGGAGAGTGAAATAGTTGAGGCTGAAGATGTAAGAGATTCATTGTTGGAGCTGACAAGGAACAGATCTGCATGTTGGAGTGATGAGATGACAGCAACATCGTCTGAGAATGGTGTCATCAGTAAGGACCAACATGATCAACAGACTGTTGCTGCATATCATTCACACCAGTTTCATAGTTAA 1743 0.385 MVLLKCDMNNFIMQNFSERLRPLVGLNGWDYCVYWKLSEDQRFLEWLGCCCGGSESNQNGGREEHIFAISSCRDTMFSHPRTNSCDLLSQLNTSITTDSGIHAQTLLTNQPSWLNYPNTLDPNTLQETINGTHVLIPVPGGLVELFVTKQVGEDQQVIDFITSQCIVMVDQEGMMNNSMSNMQSNQAIVDEIDGDKTSNHFHAPETLNLPHDMSVMNFMQQFNYSYNYNQQQNRIKNDETFSEEYQGSFLHDLENNNNNNNSSSILKSNTEEEHDNKSLMTDNNQYMFVDPLDSKRKHEQAVGRSESMSDCSDQNEEEDDGKFRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDTGTESNCIVNGNNNQYNGGVQTQLEDNTNNVPKEEHGFHVGNGYVSKQKQEDVGTGTDKQTQQMEPQVEVALIDGNEYFLKVFCEHRPGGFVRLMEAFNTLGMDVMHATVTSHKGLVSNVFKVEKKESEIVEAEDVRDSLLELTRNRSACWSDEMTATSSENGVISKDQHDQQTVAAYHSHQFHS 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00546 580 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 333 393 IPR036638 GO:0046983
Vivi2g00546 580 SUPERFAMILY ACT-like 471 538 IPR045865 -
Vivi2g00546 580 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 330 379 IPR011598 GO:0046983
Vivi2g00546 580 SMART finulus 336 385 IPR011598 GO:0046983
Vivi2g00546 580 Coils Coil 369 396 - -
Vivi2g00546 580 Coils Coil 518 538 - -
Vivi2g00546 580 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 150 540 - -
Vivi2g00546 580 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 18 163 IPR025610 -
Vivi2g00546 580 Gene3D - 320 395 IPR036638 GO:0046983
Vivi2g00546 580 CDD bHLH_AtAMS_like 333 403 - -
Vivi2g00546 580 MobiDBLite consensus disorder prediction 251 267 - -
Vivi2g00546 580 MobiDBLite consensus disorder prediction 251 341 - -
Vivi2g00546 580 Pfam Helix-loop-helix DNA-binding domain 337 380 IPR011598 GO:0046983
Vivi2g00546 580 CDD ACT_UUR-ACR-like 475 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00546 Vivi-Chr2 14023871 14026692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00546 13 555 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 46.372 2.76e-149 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g00546 bHLH-MYC_N 3.3e-20 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00546 - - psat:127097943 1049.65