Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00540 ATGCTTAAGAGAAGCAATTCATCTTCTGATGCCTATAGGCAAAAGCAATGTTTCATTTGGCTACGTGTTGGTCGTAGTTTCTGTTTCTGCATACGGCATAATGAGAAAAAGGAAGATGCAGCCGAACCTGAGACCGACCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTTAAAGCGGATGAAAGAGATGTTTATGAGTTCTTCTCAAGGGCAGGCAAGGTGCGAGACGTTCGCTTGATTTTGGACCGCAATTCAAGACGTTCTAAAGGTGTCGGGTATATTGAGTTCTACGATGTTATGTCTGTTCCCATGGCAATAGCGCTTTCAGGCCAACCAATTCTCGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCTACAGCATCTGTTGCCAATGGACCTTCTGGAAATTTAGGTCCTTATTCTGGGGGTGCAAGAAGGCTCTATGTTGGCAATCTGCATTCCAGTATTACTGAAGCTGATCTTCATGGGGTCTTTGAAGCATTTGGTCAAGTTGAGCTAGTTCAGCTGCCTCTTGATGACATTGGGCATTGCAAAGGTTTTGGCTTTGTGCAGTTTGCCCGCCTTGAAGATGCAAAAAATGCTCAGAGCTTGAATAGTCAATTGGAGATTGGTGGCAGGACAATCAAGGTATCAGCTGTTACTGATCAGTCTGGAATGCAAGAATTTGGTGGAAATACTGGTGATATTGATGATGATGAAGGTGGTGGCTTGTCCTTGAATGCCTCGTCCCGAGCATTACTCATGCAGAGGTTGGATCGCAGTGGCATTGCATCAAGTATCGTTGGTTTTCTGGGCAATCCCGTTGTCAACAATACAGGCCTTAATCTACAAGCAACGGGAAACATACCAGTGCTGACAAGTCCTTCTATTGATACAATTGGCGTTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCAGAAAATGAGACGGAACCAGACTTCGATTTGGATGTTAAAGAAGATGTTGAAGCAGAATGCTCGAAGTTCGGGAACTTAAAACATATATACGTTGATAAGAAGAGTTCTGGGTTTGTCTACTTACGATTTGAAGATACCCAATCTGCTATAGGCGCACAGCGGGCCTTACATGGAAGATGGTTTGCCGGGAAGATGATCACTGCAAGCTTTATGGTGCCCCAGTCATACGAGGATAGATTCCCAGACAGCAAATAA 1233 0.4363 MLKRSNSSSDAYRQKQCFIWLRVGRSFCFCIRHNEKKEDAAEPETDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLILDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPILGQPVMVKPSEAEKNLVQSTASVANGPSGNLGPYSGGARRLYVGNLHSSITEADLHGVFEAFGQVELVQLPLDDIGHCKGFGFVQFARLEDAKNAQSLNSQLEIGGRTIKVSAVTDQSGMQEFGGNTGDIDDDEGGGLSLNASSRALLMQRLDRSGIASSIVGFLGNPVVNNTGLNLQATGNIPVLTSPSIDTIGVPSECLLLKNMFDPENETEPDFDLDVKEDVEAECSKFGNLKHIYVDKKSSGFVYLRFEDTQSAIGAQRALHGRWFAGKMITASFMVPQSYEDRFPDSK 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00540 410 CDD RRM3_RBM39_like 315 397 - -
Vivi2g00540 410 FunFam Splicing factor, CC1-like protein 311 410 - -
Vivi2g00540 410 SUPERFAMILY RNA-binding domain, RBD 156 403 IPR035979 GO:0003676
Vivi2g00540 410 CDD RRM1_RBM39_like 53 125 - -
Vivi2g00540 410 FunFam CC1-like, splicing factor 151 259 - -
Vivi2g00540 410 NCBIfam splicing factor, CC1-like family 33 408 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vivi2g00540 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 129 IPR000504 GO:0003723
Vivi2g00540 410 Gene3D - 31 139 IPR012677 -
Vivi2g00540 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 233 IPR000504 GO:0003723
Vivi2g00540 410 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 248 334 IPR029123 -
Vivi2g00540 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 339 392 IPR000504 GO:0003723
Vivi2g00540 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 121 IPR000504 GO:0003723
Vivi2g00540 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 227 IPR000504 GO:0003723
Vivi2g00540 410 SUPERFAMILY RNA-binding domain, RBD 46 154 IPR035979 GO:0003676
Vivi2g00540 410 FunFam RNA-binding protein 39 isoform X1 45 137 - -
Vivi2g00540 410 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 12 409 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vivi2g00540 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 399 IPR000504 GO:0003723
Vivi2g00540 410 Gene3D - 311 410 IPR012677 -
Vivi2g00540 410 SMART rrm1_1 317 395 IPR000504 GO:0003723
Vivi2g00540 410 SMART rrm1_1 157 229 IPR000504 GO:0003723
Vivi2g00540 410 SMART rrm1_1 53 125 IPR000504 GO:0003723
Vivi2g00540 410 Gene3D - 151 258 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00540 Vivi-Chr2 13969231 13975516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00540 53 219 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 2.89e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00540 K13091 - gmx:100789839 660.988