Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00537 ATGATGGAATTTGATGAGTATGAATATCTAGAGAAAACAGTTGATAATTCTGAGCTTAAGAACAAGAATGGGGAAAAGACTGTGAAATTGGATGATAGTGTTCGTAGTAGAAGCTCGAACTCGAAGCATAAGGATAATGAGAAGCATGATGATGTTGATGTTGATAATTGGTTTATGTATTCGAAATCTGGAGATGGTTCTCGTGGTTATGACAGGGAGAAAGAAAGAGGCTTGTCTCGGCGTCGTTCTAGACCTAGAGATGGAGATAAGGAGAACGATCAGCGTAGAGGCTCTCAGGGTAACGGGGATAGGAAGAGAGATAGGGAGAGGGAGAGTGAAGGAAAGTATAGAAGGGAGAGAGACAGAGATCAGGAGGTTGAAAGAGAGAGAAGGAAACGAGGGAGTGAGGGCGAAAGAGAGAAAGAACGCACTCAACGAAGCAAAAGTATATCTGAAAGGAATCGAGGTGATATGGATGGCAGAACCCGAGAGACAAGTCGTGATAGAGGAATGGCAAGGGACACAAAGGATTACAGAGACAGAGGAATGGCAAGGGACACTAAGGAACCGGATAGAGAAAAGTTGGAAAACAGACGGCATAATGAGAAAAAGGAAGATGCAGCCGAACCTGAGACCGACCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTTAAAGCGGATGAAAGAGATGTTTATGAGTTCTTCTCAAGGGCAGGCAAGGTGCGAGACGTTCGCTTGATTTTGGACCGCAATTCAAGACGTTCTAAAGGTGTCGGGTATATTGAGTTCTACGATGTTATGTCTGTTCCCATGGCAATAGCGCTTTCAGGCCAACCAATTCTCGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCTACAGCATCTGTTGCCAATGGACCTTCTGGAAATTTAGGTCCTTATTCTGGGGGTGCAAGAAGGCTCTATGTTGGCAATCTGCATTCCAGTATTACTGAAGCTGATCTTCATGGGGTCTTTGAAGCATTTGGTCAAGTTGAGCTAGTTCAGCTGCCTCTTGATGACATTGGGCATTGCAAAGGTTTTGGCTTTGTGCAGTTTGCCCGCCTTGAAGATGCAAAAAATGCTCAGAGCTTGAATAGTCAATTGGAGATTGGTGGCAGGACAATCAAGGTATCAGCTGTTACTGATCAGTCTGGAATGCAAGAATTTGGTGGAAATACTGGTGATATTGATGATGATGAAGGTGGTGGCTTGTCCTTGAATGCCTCGTCCCGAGCATTACTCATGCAGAGGTTGGATCGCAGTGGCATTGCATCAAGTATCGTTGGTTTTCTGGGCAATCCCGTTGTCAACAATACAGGCCTTAATCTACAAGCAACGGGAAACATACCAGTGCTGACAAGTCCTTCTATTGATACAATTGGCGTTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCAGAAAATGAGACGGAACCAGACTTCGATTTGGATGTTAAAGAAGATGTTGAAGCAGAATGCTCGAAGTTCGGGAACTTAAAACATATATACGTTGATAAGAAGAGTTCTGGGTTTGTCTACTTACGATTTGAAGATACCCAATCTGCTATAGGCGCACAGCGGGCCTTACATGGAAGATGGTTTGCCGGGAAGATGATCACTGCAAGCTTTATGGTGCCCCAGTCATACGAGGATAGATTCCCAGACAGCAAATAA 1734 0.4389 MMEFDEYEYLEKTVDNSELKNKNGEKTVKLDDSVRSRSSNSKHKDNEKHDDVDVDNWFMYSKSGDGSRGYDREKERGLSRRRSRPRDGDKENDQRRGSQGNGDRKRDRERESEGKYRRERDRDQEVERERRKRGSEGEREKERTQRSKSISERNRGDMDGRTRETSRDRGMARDTKDYRDRGMARDTKEPDREKLENRRHNEKKEDAAEPETDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLILDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPILGQPVMVKPSEAEKNLVQSTASVANGPSGNLGPYSGGARRLYVGNLHSSITEADLHGVFEAFGQVELVQLPLDDIGHCKGFGFVQFARLEDAKNAQSLNSQLEIGGRTIKVSAVTDQSGMQEFGGNTGDIDDDEGGGLSLNASSRALLMQRLDRSGIASSIVGFLGNPVVNNTGLNLQATGNIPVLTSPSIDTIGVPSECLLLKNMFDPENETEPDFDLDVKEDVEAECSKFGNLKHIYVDKKSSGFVYLRFEDTQSAIGAQRALHGRWFAGKMITASFMVPQSYEDRFPDSK 577
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00537 577 MobiDBLite consensus disorder prediction 66 218 - -
Vivi2g00537 577 SUPERFAMILY RNA-binding domain, RBD 213 321 IPR035979 GO:0003676
Vivi2g00537 577 NCBIfam splicing factor, CC1-like family 103 575 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vivi2g00537 577 SUPERFAMILY RNA-binding domain, RBD 323 570 IPR035979 GO:0003676
Vivi2g00537 577 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 576 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vivi2g00537 577 SMART rrm1_1 324 396 IPR000504 GO:0003723
Vivi2g00537 577 SMART rrm1_1 484 562 IPR000504 GO:0003723
Vivi2g00537 577 SMART rrm1_1 220 292 IPR000504 GO:0003723
Vivi2g00537 577 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 296 IPR000504 GO:0003723
Vivi2g00537 577 FunFam RNA-binding protein 39 isoform X1 212 304 - -
Vivi2g00537 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 506 559 IPR000504 GO:0003723
Vivi2g00537 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 288 IPR000504 GO:0003723
Vivi2g00537 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 325 394 IPR000504 GO:0003723
Vivi2g00537 577 MobiDBLite consensus disorder prediction 1 56 - -
Vivi2g00537 577 MobiDBLite consensus disorder prediction 1 218 - -
Vivi2g00537 577 CDD RRM1_RBM39_like 220 292 - -
Vivi2g00537 577 Gene3D - 321 425 IPR012677 -
Vivi2g00537 577 Gene3D - 184 320 IPR012677 -
Vivi2g00537 577 CDD RRM3_RBM39_like 482 564 - -
Vivi2g00537 577 Gene3D - 478 577 IPR012677 -
Vivi2g00537 577 FunFam Splicing factor, CC1-like protein 478 577 - -
Vivi2g00537 577 FunFam CC1-like, splicing factor 318 426 - -
Vivi2g00537 577 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 323 400 IPR000504 GO:0003723
Vivi2g00537 577 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 483 566 IPR000504 GO:0003723
Vivi2g00537 577 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 415 501 IPR029123 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi2g00537 Vivi-Chr2 13967356 13975516 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00537 220 386 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 1.60e-13 71.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00537 K13091 - gmx:100789839 777.704