Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi2g00537 | ATGATGGAATTTGATGAGTATGAATATCTAGAGAAAACAGTTGATAATTCTGAGCTTAAGAACAAGAATGGGGAAAAGACTGTGAAATTGGATGATAGTGTTCGTAGTAGAAGCTCGAACTCGAAGCATAAGGATAATGAGAAGCATGATGATGTTGATGTTGATAATTGGTTTATGTATTCGAAATCTGGAGATGGTTCTCGTGGTTATGACAGGGAGAAAGAAAGAGGCTTGTCTCGGCGTCGTTCTAGACCTAGAGATGGAGATAAGGAGAACGATCAGCGTAGAGGCTCTCAGGGTAACGGGGATAGGAAGAGAGATAGGGAGAGGGAGAGTGAAGGAAAGTATAGAAGGGAGAGAGACAGAGATCAGGAGGTTGAAAGAGAGAGAAGGAAACGAGGGAGTGAGGGCGAAAGAGAGAAAGAACGCACTCAACGAAGCAAAAGTATATCTGAAAGGAATCGAGGTGATATGGATGGCAGAACCCGAGAGACAAGTCGTGATAGAGGAATGGCAAGGGACACAAAGGATTACAGAGACAGAGGAATGGCAAGGGACACTAAGGAACCGGATAGAGAAAAGTTGGAAAACAGACGGCATAATGAGAAAAAGGAAGATGCAGCCGAACCTGAGACCGACCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTTAAAGCGGATGAAAGAGATGTTTATGAGTTCTTCTCAAGGGCAGGCAAGGTGCGAGACGTTCGCTTGATTTTGGACCGCAATTCAAGACGTTCTAAAGGTGTCGGGTATATTGAGTTCTACGATGTTATGTCTGTTCCCATGGCAATAGCGCTTTCAGGCCAACCAATTCTCGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCTACAGCATCTGTTGCCAATGGACCTTCTGGAAATTTAGGTCCTTATTCTGGGGGTGCAAGAAGGCTCTATGTTGGCAATCTGCATTCCAGTATTACTGAAGCTGATCTTCATGGGGTCTTTGAAGCATTTGGTCAAGTTGAGCTAGTTCAGCTGCCTCTTGATGACATTGGGCATTGCAAAGGTTTTGGCTTTGTGCAGTTTGCCCGCCTTGAAGATGCAAAAAATGCTCAGAGCTTGAATAGTCAATTGGAGATTGGTGGCAGGACAATCAAGGTATCAGCTGTTACTGATCAGTCTGGAATGCAAGAATTTGGTGGAAATACTGGTGATATTGATGATGATGAAGGTGGTGGCTTGTCCTTGAATGCCTCGTCCCGAGCATTACTCATGCAGAGGTTGGATCGCAGTGGCATTGCATCAAGTATCGTTGGTTTTCTGGGCAATCCCGTTGTCAACAATACAGGCCTTAATCTACAAGCAACGGGAAACATACCAGTGCTGACAAGTCCTTCTATTGATACAATTGGCGTTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCAGAAAATGAGACGGAACCAGACTTCGATTTGGATGTTAAAGAAGATGTTGAAGCAGAATGCTCGAAGTTCGGGAACTTAAAACATATATACGTTGATAAGAAGAGTTCTGGGTTTGTCTACTTACGATTTGAAGATACCCAATCTGCTATAGGCGCACAGCGGGCCTTACATGGAAGATGGTTTGCCGGGAAGATGATCACTGCAAGCTTTATGGTGCCCCAGTCATACGAGGATAGATTCCCAGACAGCAAATAA | 1734 | 0.4389 | MMEFDEYEYLEKTVDNSELKNKNGEKTVKLDDSVRSRSSNSKHKDNEKHDDVDVDNWFMYSKSGDGSRGYDREKERGLSRRRSRPRDGDKENDQRRGSQGNGDRKRDRERESEGKYRRERDRDQEVERERRKRGSEGEREKERTQRSKSISERNRGDMDGRTRETSRDRGMARDTKDYRDRGMARDTKEPDREKLENRRHNEKKEDAAEPETDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLILDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPILGQPVMVKPSEAEKNLVQSTASVANGPSGNLGPYSGGARRLYVGNLHSSITEADLHGVFEAFGQVELVQLPLDDIGHCKGFGFVQFARLEDAKNAQSLNSQLEIGGRTIKVSAVTDQSGMQEFGGNTGDIDDDEGGGLSLNASSRALLMQRLDRSGIASSIVGFLGNPVVNNTGLNLQATGNIPVLTSPSIDTIGVPSECLLLKNMFDPENETEPDFDLDVKEDVEAECSKFGNLKHIYVDKKSSGFVYLRFEDTQSAIGAQRALHGRWFAGKMITASFMVPQSYEDRFPDSK | 577 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi2g00537 | 577 | MobiDBLite | consensus disorder prediction | 66 | 218 | - | - | |
| Vivi2g00537 | 577 | SUPERFAMILY | RNA-binding domain, RBD | 213 | 321 | IPR035979 | GO:0003676 | |
| Vivi2g00537 | 577 | NCBIfam | splicing factor, CC1-like family | 103 | 575 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
| Vivi2g00537 | 577 | SUPERFAMILY | RNA-binding domain, RBD | 323 | 570 | IPR035979 | GO:0003676 | |
| Vivi2g00537 | 577 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 2 | 576 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
| Vivi2g00537 | 577 | SMART | rrm1_1 | 324 | 396 | IPR000504 | GO:0003723 | |
| Vivi2g00537 | 577 | SMART | rrm1_1 | 484 | 562 | IPR000504 | GO:0003723 | |
| Vivi2g00537 | 577 | SMART | rrm1_1 | 220 | 292 | IPR000504 | GO:0003723 | |
| Vivi2g00537 | 577 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 219 | 296 | IPR000504 | GO:0003723 | |
| Vivi2g00537 | 577 | FunFam | RNA-binding protein 39 isoform X1 | 212 | 304 | - | - | |
| Vivi2g00537 | 577 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 506 | 559 | IPR000504 | GO:0003723 | |
| Vivi2g00537 | 577 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 229 | 288 | IPR000504 | GO:0003723 | |
| Vivi2g00537 | 577 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 325 | 394 | IPR000504 | GO:0003723 | |
| Vivi2g00537 | 577 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
| Vivi2g00537 | 577 | MobiDBLite | consensus disorder prediction | 1 | 218 | - | - | |
| Vivi2g00537 | 577 | CDD | RRM1_RBM39_like | 220 | 292 | - | - | |
| Vivi2g00537 | 577 | Gene3D | - | 321 | 425 | IPR012677 | - | |
| Vivi2g00537 | 577 | Gene3D | - | 184 | 320 | IPR012677 | - | |
| Vivi2g00537 | 577 | CDD | RRM3_RBM39_like | 482 | 564 | - | - | |
| Vivi2g00537 | 577 | Gene3D | - | 478 | 577 | IPR012677 | - | |
| Vivi2g00537 | 577 | FunFam | Splicing factor, CC1-like protein | 478 | 577 | - | - | |
| Vivi2g00537 | 577 | FunFam | CC1-like, splicing factor | 318 | 426 | - | - | |
| Vivi2g00537 | 577 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 323 | 400 | IPR000504 | GO:0003723 | |
| Vivi2g00537 | 577 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 483 | 566 | IPR000504 | GO:0003723 | |
| Vivi2g00537 | 577 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 415 | 501 | IPR029123 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi2g00537 | Vivi-Chr2 | 13967356 | 13975516 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi2g00537 | 220 | 386 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 28.402 | 1.60e-13 | 71.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi2g00537 | K13091 | - | gmx:100789839 | 777.704 |