LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g00501	ATGGACATTGTGCAATATATCCGTTATGTTTGTAACAAGCATGGTTTCAAGCACGGAAGTCGGGCGGATCTTAAGAACAAGATAAACTCGGATACTCCTGTTCTCATTGAATATCAGAAAGAGAAAGAACTTCCCGAGGAAAGGACTGGTTGCCCAGCTAGTATTTCGTTGAAGTATGATTCCAATGTTAAAGGTTATCACATATACAAATGGAATGTTACTCATAACCACCCTCTCCATAAACCCGAGCATTCGCATTACTTGAGAACGGCTCGAGAGATTAGTGAGCCTAAAAAACAACTTGCTATAATAAATTCAAAATCAGGCATGTCTGTAAGATCCTCCTTTCAAGTTATGCGTCAAATAGCTGGTGGTTCGAAGAACCTTGGGTATTGCTTCCAAGATTTAAAGAACTTTCTCACCACTGTTCGACAAAAGGAAATGGTCATTGGTGATGCAACTATTATCCAAGAATATCTTAGAAACGAAGCTTTGAGGAACCCATCATTTTATTATGATATCCAAGTAGATTCTGAAGAGAACATAGCTAGTATTTTCTGGTCAGATGCAATCATGCAGCAAGACTATGAATTATTTGGTGATCTCATCAGTTTCGACATAACTTATCGAACAAATACGGAGTATCGCCCATTAGCTCCGTTCCTTGGATTTGACAACCACCATAAGAGTGTATTATTTGGTTGTGCCCTGCTCTACGATGAGACTTCAGCAAGTTTTGATTGGTTGTTTACCACTTTCCTGAAGTGCATGAAAAATAAGAAACCCATTACAATTTATACAGACCAAGCTTGTGCTTTGATGAAGTCAGTTCCAAACATCTTCCCCGATGTCTTCCATGGGTTGTGTTCTTGGCACATGGGGGAGAATGCAAAGTCCAACTTAGGCTCTCGTTGCAATGGTGCATTTCTTGACGAACTACATCACTTGGTTTCGAATGTTGATGATGAGGCAGAGTTTGACTTCAATTGGAATAAGATGCTTCAAAATTGTTTTGGTGGTAAAGCCACTTCTGAATTTACTTGGCTTGTCCAGATTCATCGTAATCGTACTCAATGGTCTTCTGCTTGGGTGAAATCACACTTCACTGTCGGTTTGAAGACCACACAGTTAAGTGAGTCGTTCAATGCCTTTCTTCGCCACTTTCTTCAGCCAGACCACTCACTTGTGCAATTCTTTATCCATTTCAATGTTATGGTTGAGAAAATGCGAGATAATCATGCTGATTGTGATTTCAAGGCTGCCAATACTAGGCCAAGAAACAATTATCCCAACAGCCAACTCATGAGGTCCGTTGTCGCCAAGTATACTCCAGCATCATTTGCATTCATTCACAAGCAATATGATCTTTCTTTCAAATATTATTATGAGGAGGACACGTCAAGAAGTTCAATTTCTAATAGAGTTTTCAAAGTGTTCACAATTCAACTTGTTCGTGATGCCGATGAGATGGATTTTGATAACGATGCCGCTGCGAATGTTTATATGTTGGTCGAAGAAGTTCCAGAAAACCTTCTTCCTAATGATCAAGATCCTTTGCGACTTGATGAGAGGGTTGTTAATGTAGATATTGGGAACAAGATTTTTTACTTGTACATGTCGGATGTTCGAGAATCGGGGATTCTTATGTCGCCATGTTTTCAAGATATTAGACTTCTTAGGGAGTTTTGTCCAATACCAGTCCTTGAAGTCCATACCTGA	1719	0.3962	MDIVQYIRYVCNKHGFKHGSRADLKNKINSDTPVLIEYQKEKELPEERTGCPASISLKYDSNVKGYHIYKWNVTHNHPLHKPEHSHYLRTAREISEPKKQLAIINSKSGMSVRSSFQVMRQIAGGSKNLGYCFQDLKNFLTTVRQKEMVIGDATIIQEYLRNEALRNPSFYYDIQVDSEENIASIFWSDAIMQQDYELFGDLISFDITYRTNTEYRPLAPFLGFDNHHKSVLFGCALLYDETSASFDWLFTTFLKCMKNKKPITIYTDQACALMKSVPNIFPDVFHGLCSWHMGENAKSNLGSRCNGAFLDELHHLVSNVDDEAEFDFNWNKMLQNCFGGKATSEFTWLVQIHRNRTQWSSAWVKSHFTVGLKTTQLSESFNAFLRHFLQPDHSLVQFFIHFNVMVEKMRDNHADCDFKAANTRPRNNYPNSQLMRSVVAKYTPASFAFIHKQYDLSFKYYYEEDTSRSSISNRVFKVFTIQLVRDADEMDFDNDAAANVYMLVEEVPENLLPNDQDPLRLDERVVNVDIGNKIFYLYMSDVRESGILMSPCFQDIRLLREFCPIPVLEVHT	572

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g00501	572	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	6	468	IPR031052	GO:0006355
	Vivi2g00501	572	Pfam	FAR1 DNA-binding domain	8	80	IPR004330	-
	Vivi2g00501	572	Pfam	MULE transposase domain	203	294	IPR018289	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g00501	Vivi-Chr2	13092845	13094787	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Vivi2g00501		MULE	3.1e-21	CL0219

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g00501	-		-	vvo:131626470	976.081