Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00494 ATGCAATCCATTAGAAAATCCTTCAAATCTTTCGCTTCTTACAACAAAAAATCTTCCAGAAACTTCCCAGATTCCGACGACCGTGAACACATCCCTATCCTCCCTCAAAGCCAGCGACGCCGCAGCAGCGAGGATTATTCCATGGCCGGAGACGTCGTCGTTAAAATCGACGACGGAGGAGAGCCTGCTCAGGAAAACAAGATTTGGAGAGAGTCCAGCTATGATTTCTGGAATGACACCGGTGATAATGGCGAGGAGAGTTTCGATTTTAGGAATAAAGGCCAGCAGCATCAGCATCATCCGAACCAGCGCCAGCAGCTGCAGCAACAATCGGAGGATCCTCCGTCGCAGCTGATCGGGAAATTTCTTCATAAACAGAAAGTTTCCGGCGAGATGTCGCTGGATATGGATTTGGAAATGGAGGAGTTGCAGAATGAGGAGGATGGAGACGGAAAGTTGACGCCGGTGGAAGAGTCTCCGAGGGTGATACAGCGCGAGCTCAAGGTTTCGTTTGAGGAGCCTGCTTTTAGTAATGCTGTGGAAACTCCGGTGTCTGCGCCGGCGCCGGCGTTTAATAATGTTATCGAAGCGGTGAATGATCCTGTTCGGAGGAGACATAGTAAGGATTCGCCGTCTATGGGCGATTCTTCGAGACCTCCGTTTCCGCCGAATCATGACCGGCATCGGTCTCGTTCACCGGCGGATGGTGATTGTGAGGTTCTGAGGTGTACCTCGAATGCTTCGTTTGAGAGGAATCTTTCCATGCAGAGGAAATCTGCTTTGTTGAAAACGAAAACTAAGTCTAGATTAATGGACCCGTCCCCGGATGAACAGCCTGATAGGAGATCGGGCCGGGTTGCTAAATCGGGTCAACTTTTGTCTGGATTTCTTGGGAAGAAAGGCGACGAAGACGAGGATGATCCGTTTATGGAAGAAGATTTTCCGGATGAGTTTAAGAAAACACAATTTAGTTTTTGGATTCTTCTTGAATGGTTGAGCTTGATTTTGATTATTGGAGCATTGATAACAACTATGAGTGTTCCCTTATTGAGGAATAAGAATCTGTGGCAGCTTAAGTTGTGGAAATGGGAGGTTATGATTCTTATTCTAATTTGTGGTAGATTGGTTTCCGATTGGTTTATTAGAATTGCGGTTTTTTGCATAGAAAGAAATTTTTTATTGAGAAAAAGAGTTCTTTATTTTGTGTATGGTGTGAAGAAAGCTGTGCAAAATTGTGTCTGGTTAGGACTAGTTTTGATTGCATGGCATTTTCTCTTTGATAAGAGAGTTCAAAGAGAGACAAAAGGTGTTTTCCTTCCGTATGTTACGAAAGTTTTGGTGTGTTTCTTGGTTGGTACTTTGGTGTGGTTGTTAAAAACTCTAGTAGTTAAGGTTTTAGCTTCTTCTTTTCATGTGAGCACGTACTTTGATAGGATTCAGGAGTCGTTGTTTAATCAATTTGTGATAGAAACACTATCGGGGCCACCTTTGGTGGAAATTCGAAGGGCTGAAGAGGAAGAGGAAAGACTTGCTGACGAGGTTCAGAAGTTGCAAAATGCTGGTGCAAACATACCGGCTGATCTTAGAGCTACCGCATTTCCTTCAAACAGAAGTGGAAGGTTGAGGAGTGGAATGCTGCAGAAAAGTCCTCTCAAAAGTGGAAAGTTTTCGATGCCACTTTCTAAGAAGTCTGACGATGGTGGGATTGGTAGTGGTGGCGGAATAACTATTGATCATTTGCATAAGTTGAATCCAAATAATGTGTCTGCTTGGAATATGAAGAGGTTAATGAATATGGTTCGTCACGGAGTACTTACTACGTTGGATGAACAGATACTTGATTCCACTCCCGATGATGAGCATGCCACTCAAATCAGAAGTGAAAATGAGGCTAAAGCAGCTGCTAAGAAAATCTTTCAGAACGTTGCTAGGCGCGGCTGCAGGTTTATATACCCTGAGGACTTGATTCGTTTTATGCGAGAAGATGAAACGGTAAAAACCTTAAATCTCTTTGAAGGAGCGTCTGATTCTGGAAAAATCAGCAAATCTGCATTGAAGAACTGGGTGGTGAATGCGTTCAGGGAGAGGAGAGCCCTTGCTTTGACATTGAATGACACCAAAACTGCGGTGAACAAACTTCACCGAATGCTCAATTTTTTAGTTGCCATTGTCATACTGGTTATTTGGCTCTTGATATTGGAAATCGCCACCACCAAATTTCTTCTTTTCGTGAGCTCACAGCTTGTCTTGGTTGCATTTATATTCGGTAACACCTGCAAGACCGTCTTTGAAGCAATCATATTTTTATTTGTTATGCATCCATTTGATGTGGGAGATAGATGTGAAATTGATACGGTTCAGATGGTTGTTGAAGAAATGAACATATTGACTACGGTATTTTTAAGATACGATAATCTAAAGATAACGATCCCAAATAGTGTCCTTGCTACTAAGGCTATACAAAATTTCTACCGTAGTCCTGACATGGGAGATGCTATTGAATTCTGTATCCATGTAGCTACTCCGCTTGAAAAGGTTTCACTTATGAAGCATAGAATACACAGTTACATTGATAATAAGAAGGAGCATTGGTATCCTTCGCCTTTTATAGTCTTGAAGGATCACGAGCAACTGAACATGGTAAGAGTGGCAATCTGGCCAACTCATAGAATGAACTTCCAAGACATGGGAGAAAGATTTATCAGAAGGTCTGTCCTGATTGAAGAGTTGATGAAGATTTTCAGAGATCTCGACATTCAATACCGTCTCATGCCTCTCGACATCAATGTTAGAGCTATGCCTACTTCTTCTGATCGTGTTCCAGCTAGTTGGTCAATGATCTCAAATTGA 2850 0.427 MQSIRKSFKSFASYNKKSSRNFPDSDDREHIPILPQSQRRRSSEDYSMAGDVVVKIDDGGEPAQENKIWRESSYDFWNDTGDNGEESFDFRNKGQQHQHHPNQRQQLQQQSEDPPSQLIGKFLHKQKVSGEMSLDMDLEMEELQNEEDGDGKLTPVEESPRVIQRELKVSFEEPAFSNAVETPVSAPAPAFNNVIEAVNDPVRRRHSKDSPSMGDSSRPPFPPNHDRHRSRSPADGDCEVLRCTSNASFERNLSMQRKSALLKTKTKSRLMDPSPDEQPDRRSGRVAKSGQLLSGFLGKKGDEDEDDPFMEEDFPDEFKKTQFSFWILLEWLSLILIIGALITTMSVPLLRNKNLWQLKLWKWEVMILILICGRLVSDWFIRIAVFCIERNFLLRKRVLYFVYGVKKAVQNCVWLGLVLIAWHFLFDKRVQRETKGVFLPYVTKVLVCFLVGTLVWLLKTLVVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLVEIRRAEEEEERLADEVQKLQNAGANIPADLRATAFPSNRSGRLRSGMLQKSPLKSGKFSMPLSKKSDDGGIGSGGGITIDHLHKLNPNNVSAWNMKRLMNMVRHGVLTTLDEQILDSTPDDEHATQIRSENEAKAAAKKIFQNVARRGCRFIYPEDLIRFMREDETVKTLNLFEGASDSGKISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFLVAIVILVIWLLILEIATTKFLLFVSSQLVLVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDTVQMVVEEMNILTTVFLRYDNLKITIPNSVLATKAIQNFYRSPDMGDAIEFCIHVATPLEKVSLMKHRIHSYIDNKKEHWYPSPFIVLKDHEQLNMVRVAIWPTHRMNFQDMGERFIRRSVLIEELMKIFRDLDIQYRLMPLDINVRAMPTSSDRVPASWSMISN 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00494 949 MobiDBLite consensus disorder prediction 140 160 - -
Vivi2g00494 949 Coils Coil 500 523 - -
Vivi2g00494 949 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 92 944 IPR016688 -
Vivi2g00494 949 MobiDBLite consensus disorder prediction 1 118 - -
Vivi2g00494 949 Pfam Mechanosensitive ion channel 716 919 IPR006685 GO:0016020|GO:0055085
Vivi2g00494 949 Gene3D - 774 823 IPR023408 -
Vivi2g00494 949 MobiDBLite consensus disorder prediction 99 116 - -
Vivi2g00494 949 MobiDBLite consensus disorder prediction 188 238 - -
Vivi2g00494 949 MobiDBLite consensus disorder prediction 1 19 - -
Vivi2g00494 949 MobiDBLite consensus disorder prediction 20 35 - -
Vivi2g00494 949 FunFam Predicted mechanosensitive ion channel 774 823 - -
Vivi2g00494 949 MobiDBLite consensus disorder prediction 262 287 - -
Vivi2g00494 949 MobiDBLite consensus disorder prediction 221 236 - -
Vivi2g00494 949 MobiDBLite consensus disorder prediction 269 284 - -
Vivi2g00494 949 PIRSF Memb_At2g17000 35 949 IPR016688 -
Vivi2g00494 949 SUPERFAMILY Sm-like ribonucleoproteins 764 823 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00494 Vivi-Chr2 12982239 12986422 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00494 51 945 Mechanosensitive Ion Channel Family AT1G78610 56.216 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00494 K22048 - gmx:102665658 1319.68