LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g00493	ATGTTGATGGTGGCGAAGGAAGACAACGAAAGCTGCGGCAGCGGAGTGCACCACCGCACGTCGTCCACGTCATCGGCTCCGTCGCAGAGTCGGCAGCATCGCCAGAAACTCGAAGTGTACGATGAGATTCTTCGCCGGCTCATTTCAACCGGTAACGAAGAAGCTTTGCAGCCTGGATTTAACGATCAGCTTTGGGCTCATTTCAACCGTCTTCCTACACGGTATGCGTTAGATGTGAATGTAGAAAGGGCGGAAGATGTTCTTATGCACAAGAGATTACTTCATTTAGCGCATGATCCTGCTAATAGGCCTTCAATTGAAGTTCACTTAGTCCAGCTTCATCCCTCATCTGATGAAAACCCAGCTGACTCTTTCCAATCATATGCTCCTAGGGTAGATTCTGGTCAAAGCTCTCCTAAATATTCAAGCAGGCAGGGTAGTATATTCCCACCTCCTGCTTTTGGTTCTTCTCCTAATCTTGAAGCACTGGCTCTTGAAGAAAATGATTCTGAAGACTCGGAAGAGGAACGATATGTACATGCAAGTGTACAATATTCACGGCCCATGCATGAAATCACTATCTCAACAGATGACAAGCCAAAGCTTCTCAGCCAGTTAACTGCTTTGCTTGCTGAGGTTGGACTGAACATCCAAGAAGCACATGCTTTTTCCACAACTGATGGTTACTCTTTAGATGTGTTTGTTGTTGAAGGCTGGCCCTATGAGGAAACAGAGAAGCTAAAAGCAACTTTGGAAAAGGAAGTCTTGAAGATTGAGAGACATGAGAGGTCCAGGCGGCAATCAATATCATTTGTTGATGAGTGTGATCAAGCAAGGATGAACAATGAGCTGGATCATTTGAATATTCCAAATGATGGGACAGATGTTTGGGAAATAGATCCCAAACATTTGAAATATGGAACTCAAATTGCATCTGCGTCATACGGTGAACTATTTAAAGGTACATATTGTAGCCAGGAAGTAGCCATCAAAGTTCTCAAGACTGAACATGTAAGTACAGAAATGCAGAAAGAGTTTGCTCAAGAAGTCTACATCATGAGAAAGGTTCGACACAAGAATGTTGTGCAATTCATGGGCGCATGTACCAAGCCCCCAGGCTTATGCATAGTTACAGAGTTTATGTCTGGTGGAAGTGTATATGACTACTTACATAAGCATAAAGGGTGTTTTAAATTTCCTACCCTGCTCAAAGTTGCAATTGATGTTTCTAAAGGAATGAGCTACTTGCACCAACATAACATAATCCACAGAGACTTGAAATCTGCCAATCTTTTGATGGATGAAAATGGTGTTGTAAAGGTTGCCGATTTCGGAGTTGCTAGAGTGAAAGTTCAATCTGGGGTTATGACAGCGGAAACTGGGACTTATCGTTGGATGGCTCCTGAGCACACCTAA	1416	0.4343	MLMVAKEDNESCGSGVHHRTSSTSSAPSQSRQHRQKLEVYDEILRRLISTGNEEALQPGFNDQLWAHFNRLPTRYALDVNVERAEDVLMHKRLLHLAHDPANRPSIEVHLVQLHPSSDENPADSFQSYAPRVDSGQSSPKYSSRQGSIFPPPAFGSSPNLEALALEENDSEDSEEERYVHASVQYSRPMHEITISTDDKPKLLSQLTALLAEVGLNIQEAHAFSTTDGYSLDVFVVEGWPYEETEKLKATLEKEVLKIERHERSRRQSISFVDECDQARMNNELDHLNIPNDGTDVWEIDPKHLKYGTQIASASYGELFKGTYCSQEVAIKVLKTEHVSTEMQKEFAQEVYIMRKVRHKNVVQFMGACTKPPGLCIVTEFMSGGSVYDYLHKHKGCFKFPTLLKVAIDVSKGMSYLHQHNIIHRDLKSANLLMDENGVVKVADFGVARVKVQSGVMTAETGTYRWMAPEHT	471

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g00493	471	Gene3D	Phosphorylase Kinase; domain 1	294	382	-	-
	Vivi2g00493	471	Pfam	Protein tyrosine and serine/threonine kinase	304	470	IPR001245	GO:0004672\|GO:0006468
	Vivi2g00493	471	CDD	STKc_MAP3K-like	310	469	-	-
	Vivi2g00493	471	Gene3D	-	188	262	-	-
	Vivi2g00493	471	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	421	433	IPR008271	GO:0004672\|GO:0006468
	Vivi2g00493	471	SMART	serkin_6	304	471	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g00493	471	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	97	469	-	-
	Vivi2g00493	471	SUPERFAMILY	Protein kinase-like (PK-like)	294	470	IPR011009	-
	Vivi2g00493	471	ProSiteProfiles	Protein kinase domain profile.	304	471	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi2g00493	471	CDD	ACT_TyrKc	189	256	-	-
	Vivi2g00493	471	Gene3D	Transferase(Phosphotransferase) domain 1	383	471	-	-
	Vivi2g00493	471	FunFam	Serine/threonine-protein kinase isoform 1	294	382	-	-
	Vivi2g00493	471	MobiDBLite	consensus disorder prediction	117	152	-	-
	Vivi2g00493	471	ProSiteProfiles	ACT domain profile.	191	266	IPR002912	-
	Vivi2g00493	471	SUPERFAMILY	ACT-like	189	253	IPR045865	-
	Vivi2g00493	471	MobiDBLite	consensus disorder prediction	115	155	-	-
	Vivi2g00493	471	MobiDBLite	consensus disorder prediction	15	33	-	-
	Vivi2g00493	471	MobiDBLite	consensus disorder prediction	1	35	-	-
	Vivi2g00493	471	Coils	Coil	241	261	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g00493	Vivi-Chr2	12939382	12944916	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g00493	7	469	MAP Kinase Kinase Kinase	AT4G38470	68.898	0.0	624

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Vivi2g00493		PK_Tyr_Ser-Thr	1e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g00493	-		-	gmx:100805180	750.74