LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g00492	ATGTTGATGGTGGCGAAGGAAGACAACGAAAGCTGCGGCAGCGGAGTGCACCACCGCACGTCGTCCACGTCATCGGCTCCGTCGCAGAGTCGGCAGCATCGCCAGAAACTCGAAGTGTACGATGAGATTCTTCGCCGGCTCATTTCAACCGGTAACGAAGAAGCTTTGCAGCCTGGATTTAACGATCAGCTTTGGGCTCATTTCAACCGTCTTCCTACACGGTATGCGTTAGATGTGAATGTAGAAAGGGCGGAAGATGTTCTTATGCACAAGAGATTACTTCATTTAGCGCATGATCCTGCTAATAGGCCTTCAATTGAAGTTCACTTAGTCCAGCTTCATCCCTCATCTGATGAAAACCCAGCTGACTCTTTCCAATCATATGCTCCTAGGGTAGATTCTGGTCAAAGCTCTCCTAAATATTCAAGCAGGCAGGGTAGTATATTCCCACCTCCTGCTTTTGGTTCTTCTCCTAATCTTGAAGCACTGGCTCTTGAAGAAAATGATTCTGAAGACTCGGAAGAGGAACGATATGTACATGCAAGTGTACAATATTCACGGCCCATGCATGAAATCACTATCTCAACAGATGACAAGCCAAAGCTTCTCAGCCAGTTAACTGCTTTGCTTGCTGAGGTTGGACTGAACATCCAAGAAGCACATGCTTTTTCCACAACTGATGGTTACTCTTTAGATGTGTTTGTTGTTGAAGGCTGGCCCTATGAGGAAACAGAGAAGCTAAAAGCAACTTTGGAAAAGGAAGTCTTGAAGATTGAGAGACATGAGAGGTCCAGGCGGCAATCAATATCATTTGTTGATGAGTGTGATCAAGCAAGGATGAACAATGAGCTGGATCATTTGAATATTCCAAATGATGGGACAGATGTTTGGGAAATAGATCCCAAACATTTGAAATATGGAACTCAAATTGCATCTGCGTCATACGGTGAACTATTTAAAGGTACATATTGTAGCCAGGAAGTAGCCATCAAAGTTCTCAAGACTGAACATGTAAGTACAGAAATGCAGAAAGAGTTTGCTCAAGAAGTCTACATCATGAGAAAGGTTCGACACAAGAATGTTGTGCAATTCATGGGCGCATGTACCAAGCCCCCAGGCTTATGCATAGTTACAGAGTTTATGTCTGGTGGAAGTGTATATGACTACTTACATAAGCATAAAGGGTGTTTTAAATTTCCTACCCTGCTCAAAGTTGCAATTGATGTTTCTAAAGGAATGAGCTACTTGCACCAACATAACATAATCCACAGAGACTTGAAATCTGCCAATCTTTTGATGGATGAAAATGGTGTTGTAAAGGTTGCCGATTTCGGAGTTGCTAGAGTGAAAGTTCAATCTGGGGTTATGACAGCGGAAACTGGGACTTATCGTTGGATGGCTCCTGAGGTTATTGAACACAAGCCATATGATCACAAGGCGGATGTATTTAGTTTTGGAATTGTTTTATGGGAGTTGCTCACTGGAAAGCTTCCATACGAATATTTGACCCCTCTACAGGCAGCCATAGGAGTTGTTCAGAAGGGTAAACGGCCCGCCATCCCCAAGAGTGCTCATCCAAAGTTTGTTCAGATTCTTGAGAAGTCTTGGCAGCAAGATCCAACATTAAGACCCGATTTCTCTGAAATCATTGAGCTCTTGCAGCAGTTAGCTAAGGAGGTTGGAGATGAAGGAGAGCGCCGGGATAGATCGGGAGGATTTCTGTCTGTCCTCAGACGAGGTCATCACTAA	1749	0.4391	MLMVAKEDNESCGSGVHHRTSSTSSAPSQSRQHRQKLEVYDEILRRLISTGNEEALQPGFNDQLWAHFNRLPTRYALDVNVERAEDVLMHKRLLHLAHDPANRPSIEVHLVQLHPSSDENPADSFQSYAPRVDSGQSSPKYSSRQGSIFPPPAFGSSPNLEALALEENDSEDSEEERYVHASVQYSRPMHEITISTDDKPKLLSQLTALLAEVGLNIQEAHAFSTTDGYSLDVFVVEGWPYEETEKLKATLEKEVLKIERHERSRRQSISFVDECDQARMNNELDHLNIPNDGTDVWEIDPKHLKYGTQIASASYGELFKGTYCSQEVAIKVLKTEHVSTEMQKEFAQEVYIMRKVRHKNVVQFMGACTKPPGLCIVTEFMSGGSVYDYLHKHKGCFKFPTLLKVAIDVSKGMSYLHQHNIIHRDLKSANLLMDENGVVKVADFGVARVKVQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEYLTPLQAAIGVVQKGKRPAIPKSAHPKFVQILEKSWQQDPTLRPDFSEIIELLQQLAKEVGDEGERRDRSGGFLSVLRRGHH	582

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vivi2g00492	582	SUPERFAMILY	ACT-like	189	253	IPR045865	-
Vivi2g00492	582	Gene3D	-	188	262	-	-
Vivi2g00492	582	SUPERFAMILY	Protein kinase-like (PK-like)	294	556	IPR011009	-
Vivi2g00492	582	Gene3D	Transferase(Phosphotransferase) domain 1	383	570	-	-
Vivi2g00492	582	Gene3D	Phosphorylase Kinase; domain 1	294	382	-	-
Vivi2g00492	582	ProSiteProfiles	Protein kinase domain profile.	304	557	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vivi2g00492	582	SMART	serkin_6	304	557	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vivi2g00492	582	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	421	433	IPR008271	GO:0004672\|GO:0006468
Vivi2g00492	582	Pfam	Protein tyrosine and serine/threonine kinase	304	553	IPR001245	GO:0004672\|GO:0006468
Vivi2g00492	582	CDD	ACT_TyrKc	189	256	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g00492	Vivi-Chr2	12939382	12946201	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g00492	2	581	MAP Kinase Kinase Kinase	AT4G35780	63.230	0.0	740

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Vivi2g00492		PK_Tyr_Ser-Thr	8.1e-72	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g00492	-		-	gmx:100805180	941.799

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