Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00487 ATGGAAGAGAACGACGATACAGTCACATATACAGTGAAAGTTACCGTTACCGTCACCATCACAGACCCCGACGAACTCCTTCCCGATACAGAAACACAACCTACTTTGAAAGAGAATGAAGGTTCAGCTAAGGGCGACGATGAAGGAAATCAGCCGGTGGAAAAGGATGGAGGAAAGGAACCGGTGGAGAAGGAAGGAGAAACGAGGAAACTCGATGACGTGGCACCACCTGGAGTACCTTCTTCTTCTTTTTCTTATACTCCAGTGTTGTTAAGCAAAGAGAAGAACAGCAGACGTGGTAGAAAAAGAAAGTCAGAGAGTGATGTTTCAAGGAATACTCGAAACAAGAAAGTTATATGCAGTGAAGGAGACTCATTAATGTGCCATCAATGCCAGAGAAATGATAAGGGTAGAGTTGTCAGATGCACTAAATGCAAACGGAGAAGATTTTGCATTCCATGTTTAACTAATTGGTATCCTAATTTGAAAGAGACTGATGTTGCTGAAGCGTGTCCTGTGTGCTGTGATAATTGCAACTGTAAAGCGTGCTTGCGATCCTTTAAACTTATCAATGAAATGAAGCAAAGGGTTGAAACCAACACCAAGGAAGAGGAGGTTGAGTTCTCTAAGTATATGCTTAAAGGGGTTCTTCCGTATTTAAGACAGTTGGATCAAGAACAGATGATTGAGAAGGAAAGAGAAGCTAAGAGACAAGGGCTCTCATTCTCAAAGCTTGAAGTAAAAGAGGGAGATTATTTTAAAGATGAGCGAGTGTACTGTGACAACTGCAAAACATCAATATTTGACTACCATAGAAGCTGTACAAAATGCCCTTTTGACATTTGTCTCCTCTGTTGCCGCGAGCTTCGTGATGGGAAGCTTCTTGGTGGTGCAGATCCAATTGAGTTTAATTTTATCTTCAGAGGGCGTAATTATCTGCATGGTGGAAATGATGATAGAATTGTCAAAGAAAAAAAGCCTCGTGATGCTGCCGAGCCTGAGATTCGTGAGTGGTCAAGATCTAGGTGGCATGCGAATGCTGATGGTAGCATTCCCTGTCCAAAAGCCGATAATGAATGTGATCATGGTTTCCTTGAACTGAGAAGGATACTTCCTCCAAATTGCATCTCCGAGTTAGTATGTAAAGCCGAAAAACTTACAGAAACATTTGAGCTTCACGTTGCAAAGGATACCCTTGATAATAGGTGTACGTGCTGGAAGTCTGTTAGGAGCGCAGATGGTTTATACAGTAACCTAAGGAAAGCAGCTTTTCGTAAAGATTCCAGTGACAACTTTTTGTACTGTCCTAGGGCTGTGGGTCTACATCAGGAAGATTTAAGGCATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGTACATCTGGTTTAAGCTGGGAACCACTAGTCATGTGGCGTGCATTTCGTCAAATATCCAATTCCAAGTTTGATGTACTTTTGGATGTGAAGACAGTTAATTGCTTAGATTGGTGCGAGGGAGATATTAACATCCACAAGTTCTTTACTGGGTACACAAATGGTCGCAATGACTGGCTTAATTGGCCTGAGATGTTGAAATTGAAAGATTGGCCTCCTTTTGATTTATTTCAGGAACTTTTACCTCGTCATCATGCCGAGTTCATATCTTCCTTGCCTTTTAAAGAATATACAGATCCTTTTATGGGGGCTCTCAACCTTTATGTGAAATTGCCGGATCACTGTGTAAAGCCAGACATGGGGCCAAGAACATATGTTGCTTATGGATATGCTCAGGAGCTTGGACGTGGTGATTCCGTGACTAAGCTCCACTGTGATGTGTCTGATGCTGTAAATGTGTTGACTCATATTGCTAAAGTGGAACCAAAACCTGAGGAAACCACAGCCATTGAGAAATTGAGACGTAAGCACCTCGAGCAAGATAAGAGGGAGCTATATGGTGATGAGAAAGTAACAGTGAAACAACAAAATGGTTTGTTGGTTGGAGAGGATTCTTTAGATGGCGCTCTCTGGGATATTTTTCGGAGAGAGGATGTACCCAAATTGGAGGAATATCTAAAGAAGCATTTCAGAGAGTTCAGACATGTCCACTGTGATCCTTTAAAGCAGGTTATTCACCCTATTCATGATCAAACCATTTATCTGACTACGGAGCATAAGAGCAAACTTAAGGAGGAGTATGGAATTGAGCCTTGGACTTTTGTTCAGAAGCTAGGAGATGCTGTTCTTATTCCTGCGGGTTTACCTCACCAAGTTAGAAATCTGAAGTCTTGCTTCAAGGTTGTACATGATTTTGTCTCTCCTGAACATGTTGGTGAGTGCATCCGTTTGACAGAGGAATTCCGCAAGCTTCCGATAAATCACAGAGCCTCCGAGGACAAGTTTGAGGTGAAGAAAATTATCATCCATGCTATGCGTGACGTGGTTGAAAAATTAGAGAAAGCAAGGTCTGGGTAA 2475 0.4206 MEENDDTVTYTVKVTVTVTITDPDELLPDTETQPTLKENEGSAKGDDEGNQPVEKDGGKEPVEKEGETRKLDDVAPPGVPSSSFSYTPVLLSKEKNSRRGRKRKSESDVSRNTRNKKVICSEGDSLMCHQCQRNDKGRVVRCTKCKRRRFCIPCLTNWYPNLKETDVAEACPVCCDNCNCKACLRSFKLINEMKQRVETNTKEEEVEFSKYMLKGVLPYLRQLDQEQMIEKEREAKRQGLSFSKLEVKEGDYFKDERVYCDNCKTSIFDYHRSCTKCPFDICLLCCRELRDGKLLGGADPIEFNFIFRGRNYLHGGNDDRIVKEKKPRDAAEPEIREWSRSRWHANADGSIPCPKADNECDHGFLELRRILPPNCISELVCKAEKLTETFELHVAKDTLDNRCTCWKSVRSADGLYSNLRKAAFRKDSSDNFLYCPRAVGLHQEDLRHFQWHWSKGEPVIVSNVLECTSGLSWEPLVMWRAFRQISNSKFDVLLDVKTVNCLDWCEGDINIHKFFTGYTNGRNDWLNWPEMLKLKDWPPFDLFQELLPRHHAEFISSLPFKEYTDPFMGALNLYVKLPDHCVKPDMGPRTYVAYGYAQELGRGDSVTKLHCDVSDAVNVLTHIAKVEPKPEETTAIEKLRRKHLEQDKRELYGDEKVTVKQQNGLLVGEDSLDGALWDIFRREDVPKLEEYLKKHFREFRHVHCDPLKQVIHPIHDQTIYLTTEHKSKLKEEYGIEPWTFVQKLGDAVLIPAGLPHQVRNLKSCFKVVHDFVSPEHVGECIRLTEEFRKLPINHRASEDKFEVKKIIIHAMRDVVEKLEKARSG 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00487 824 FunFam Transcription factor jumonji domain-containing protein 430 797 - -
Vivi2g00487 824 SMART cupin_9 547 788 IPR003347 -
Vivi2g00487 824 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 38 822 IPR045109 GO:0032454|GO:0033169
Vivi2g00487 824 ProSiteProfiles JmjC domain profile. 566 788 IPR003347 -
Vivi2g00487 824 MobiDBLite consensus disorder prediction 40 72 - -
Vivi2g00487 824 Pfam JmjC domain, hydroxylase 674 771 IPR003347 -
Vivi2g00487 824 SUPERFAMILY Clavaminate synthase-like 443 819 - -
Vivi2g00487 824 Gene3D Cupin 435 797 - -
Vivi2g00487 824 MobiDBLite consensus disorder prediction 17 110 - -
Vivi2g00487 824 ProSiteProfiles Zinc finger RING-type profile. 128 174 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00487 Vivi-Chr2 12839475 12845213 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi2g00487 JmjC 2.7e-12 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00487 K15601 - gmx:100780803 1023.46