Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00485 ATGGCGGAGGAACACAACAACACCACAACCGCACTCACAGAAGATTCCATTCCCGATCATCCAGAAATAACTGAAACACCCGAAACGGTGCCGTTCGAAGTCGATGACGTGGCAAAGGACGCGAATGTTGCATCAGAAACGGCGTCGTTGAAGGAAGCAGAAGAAGCTATGGATATTGTTACCGAAACGGCGTCGTTGAAGGACGGTTTAGCTTCGGTTGAAGGTGATGACGTGGCAGCTGGAGATTCACCTACCGTCGTAGAGCCGATAAAGAAGTATCACAGAAGGAGGAATAAACCTGGAGGAAAGAGTAATGTAGAAATCGAAGCGTTGAAGAATGAACCAAACGGAGAAGAAACGGTTAAAGCTGATGACGTGGCAGGTGGTGGCTCTGACTCTGTTCCGCCAGAGAAGAAGAAACGCGGCGTAAAGAGGAAGACGGAGAAGGAAGGTGAAGCTGTTGAAGGTGATGATGTGGCGGTGGCGGTTGTAGGTTCGTCTTCTTTTGAGGGGACTGTGAGGAAGAGTGAACGTCCTAGGAAGATTAAATCGTTTGCGGAGGATTTTGTGTCAGTGTTGGATGCGGAAGTGACGAAGAATGGGAATTGTAAAAGGAAGAAGGCGATAATAGATGTTTTTGATGCGAGTAATGCTGTACAAGAAGGGGAAGATGTGAAGGAAGAGAAGAAAAAACTTGGTAGAAAAAGGAAGAATGATTTTAGTTCTGAAGAAGATTATAAAGGTGGAGTAGGCGGGGAAAGTGTGAAGAAAGAGAAGAAAAAACCTGGTGGTAGAAGAAAGAAGAATGGTTATAGTTCTGAAGACGAATGCAAACCTGAACTAGATGATGAAAATGTGAAGAAAAAAAAGAAGAAACTTGGTAGAAAAAGTAAGAAAGTTTATAGTTCTGGAGAAGAATATAAAGCTGTAGTTGATAGCGAAAATGTAAAGAAAGAAACGGAGAAACCTGGTAGAAAAAGAAGGACAGTTTCTATTTCTGTAGAAAATGGTGAAGCTGCAGAAGAGGGGGAAAACGGTGGTTTTGATAAGGAAGAGAAGAAAACACCTGGTCGAAAAATTAAGATCGAAGAGAATGAACTGGTCTCTGAAAAGAAGTCTAAGAGTGTTGTGCTGAAGGATGAGATACAGGACTGTCCTGAAATTGAAACTGAAACGCCCGTGTATATTGATAATAAAGGTTATTCTTTGCGTAAGACTAGAAACACGAAACCTACATTAGTTGAACATGTGGTGCCAAAAATCAACAAGAAAAACCCTAAGCGGATTGAAAAGGAGTCTTTAATGTGCCATCAATGTCAGAGAAATGATAAGGGCAGGGTAGTCAGATGCACTAGCTGCAAAAGGAAAAGATTTTGCATACACTGTATAACTAATTGGTATCCTAACTGGAAAGAGGATGAAATTGCTGAGAAATGTCCGGTGTGCTGTGGTAATTGCAATTGCAAATCATGCCTGCGATCACGTGTTCTTATCAATGCAATTAAAGAAAAGACAGAAACCAACGAAGATCCTGAGGTTGGGCCCTCCAAGTATATGCTAAAAGAACTTCTTCCGTATTTAATACGATTGGATGAGGAACAAATGACCGAGAAGGAGATAGAAGCAAAAAGACAAGGGCTTCCACTATCGGAGCTAAAAATAAAAGTAGCAGAGTACTCTAAAAATGAGCGCGTGTACTGTGATAACTGCAAAACATCAATATTTGACTACCACCGAAGCTGTACAAAATGCTCATTTGACATCTGTCTCCTCTGTTGCTGTGAGCTTCGTGGTGGCAAGCTTCTAGGTGGCGATGATCCAATTGAGTTTGAGTTTATCTTCCGAGGGCGTGAATATCTACATGGCGGAGATGAAAAGAAACAAGATAGAGAAAAAAACCCTCGTTCTGCAGTCCAGCCTGAGATTTGTGAATGGTCTAAATCTGGGTGGCATGCAGATACTGATGGTAGCATTCCCTGTCCAAAGACCAATAGTGATTGTGACCATGGTTTCCTTGAACTGAGAAGCATACTTCAGCCAAATTGCATATCTGAGTTAGTATCCAAAGCAAAAGAACTTGTAGAGGAAGCAATGGAACTTCAAGATGCAGAGGAGAATCTTGATGATAGGTGTTCTTGTTTGAAGCCTGTTAGGAATTCAGATGATATACACAATAACACAAGGAAGGCAGCTTTTCGTGAAGATTCTAGCGACAACTTTTTATATTGTCCTAGGGCTGTAGATCTACGTCAGGAGGATTTAAGACATTTTCAATCACACTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGTACATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTCCGTCAGATAAGCAACACTAAGCATAAAACACTTTTGGATGTGAAGGCAATTGATTGCTTGGATTGGTGTGAGGGAGATATTAATGTGCACCAATTCTTTACTGGGTACACAGAGGGTCGTGTGGATTGGCTTAAATGGCCTCAGGTTTTGAAACTGAAAGATTGGCCTCCTTCTAATTTATTTGAGGAAAGTTTGCCTCGTCATTGTGCCGAGTTCATATATTCTTTGCCGTATAAAGAGTATACAGATCCTTTCAAAGGTGCTCTTAACCTTGCTGTGAAGTTGCCTAAAGGTGTTCTAAAGCCAGACATGGGCCCAAAAACATACATTGCTTATGGATTTGCTCAAGAACTTGGGCGGGGTGATTCTGTGACTAAGCTCCATTGTGACATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTAAAGTTGAATTGAAAGATAAGAGCATTGAGGCCATCAAGAAACTGACACGAAAGCACCTCAAGCAAGACAAAAGGGAGCTACATCTACATGGTGATAATCAGGATGGACAAACCAATGCTAGCATGCTTGATAATTCATCGTCTTCCATAAATGCATCAGACGATGAGAAGGTGACTGATCCTGTTCATCAACACTCAGGTGCAGATAATGATGGCCTTTCTTCTGGATCAAAGCTCAAAAAGGTCGATAAAGTGATTGTGAAAAAAGATAATAGTTTGTTGGTTGGGGATGATTCTTTAGATGGTGCTCTTTGGGATATTTTTCGGAGAGAGGATGTCCCGAAATTGGAGGAATATCTAAAGAATCATTTTAGAGAGTTCAGGCATGCCCATTGCTCTCCTTTAAAGCAGGTTATTCACCCCATCCACGATCAGACCTTTTATTTGACTATTGCACATAAGAAGAGACTGAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTGTTCAGAAGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCCCACCAAGTCCGTAATCTGAAGTCATGCACCAAGGTTGCTCTTGACTTTGTCTCTCCAGAAAATGTCGGCGAGTGCTTTCGCTTGACAGAGGAGTTTCGCAAACTTCCAGTAAATCACAAGTCCACAGAGGACAAATTGGAGGTTAAGAAAATGATTATATATGCGATGCTTGACCTGGTCAAAACCTTGGAGAAAGCAAGGTCTGGGGAAACTGGAGAAACTAAGGTTCCAGTGTAA 3582 0.4193 MAEEHNNTTTALTEDSIPDHPEITETPETVPFEVDDVAKDANVASETASLKEAEEAMDIVTETASLKDGLASVEGDDVAAGDSPTVVEPIKKYHRRRNKPGGKSNVEIEALKNEPNGEETVKADDVAGGGSDSVPPEKKKRGVKRKTEKEGEAVEGDDVAVAVVGSSSFEGTVRKSERPRKIKSFAEDFVSVLDAEVTKNGNCKRKKAIIDVFDASNAVQEGEDVKEEKKKLGRKRKNDFSSEEDYKGGVGGESVKKEKKKPGGRRKKNGYSSEDECKPELDDENVKKKKKKLGRKSKKVYSSGEEYKAVVDSENVKKETEKPGRKRRTVSISVENGEAAEEGENGGFDKEEKKTPGRKIKIEENELVSEKKSKSVVLKDEIQDCPEIETETPVYIDNKGYSLRKTRNTKPTLVEHVVPKINKKNPKRIEKESLMCHQCQRNDKGRVVRCTSCKRKRFCIHCITNWYPNWKEDEIAEKCPVCCGNCNCKSCLRSRVLINAIKEKTETNEDPEVGPSKYMLKELLPYLIRLDEEQMTEKEIEAKRQGLPLSELKIKVAEYSKNERVYCDNCKTSIFDYHRSCTKCSFDICLLCCCELRGGKLLGGDDPIEFEFIFRGREYLHGGDEKKQDREKNPRSAVQPEICEWSKSGWHADTDGSIPCPKTNSDCDHGFLELRSILQPNCISELVSKAKELVEEAMELQDAEENLDDRCSCLKPVRNSDDIHNNTRKAAFREDSSDNFLYCPRAVDLRQEDLRHFQSHWSKGEPVIVSNVLECTSGLSWEPLVMWRAFRQISNTKHKTLLDVKAIDCLDWCEGDINVHQFFTGYTEGRVDWLKWPQVLKLKDWPPSNLFEESLPRHCAEFIYSLPYKEYTDPFKGALNLAVKLPKGVLKPDMGPKTYIAYGFAQELGRGDSVTKLHCDMSDAVNVLTHIAKVELKDKSIEAIKKLTRKHLKQDKRELHLHGDNQDGQTNASMLDNSSSSINASDDEKVTDPVHQHSGADNDGLSSGSKLKKVDKVIVKKDNSLLVGDDSLDGALWDIFRREDVPKLEEYLKNHFREFRHAHCSPLKQVIHPIHDQTFYLTIAHKKRLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRKLPVNHKSTEDKLEVKKMIIYAMLDLVKTLEKARSGETGETKVPV 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00485 1193 ProSiteProfiles Zinc finger RING-type profile. 436 482 IPR001841 -
Vivi2g00485 1193 SMART cupin_9 855 1148 IPR003347 -
Vivi2g00485 1193 MobiDBLite consensus disorder prediction 1 15 - -
Vivi2g00485 1193 Coils Coil 683 710 - -
Vivi2g00485 1193 MobiDBLite consensus disorder prediction 267 289 - -
Vivi2g00485 1193 MobiDBLite consensus disorder prediction 220 356 - -
Vivi2g00485 1193 MobiDBLite consensus disorder prediction 955 1007 - -
Vivi2g00485 1193 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 152 1183 IPR045109 GO:0032454|GO:0033169
Vivi2g00485 1193 Pfam JmjC domain, hydroxylase 1031 1131 IPR003347 -
Vivi2g00485 1193 MobiDBLite consensus disorder prediction 134 154 - -
Vivi2g00485 1193 MobiDBLite consensus disorder prediction 965 987 - -
Vivi2g00485 1193 MobiDBLite consensus disorder prediction 94 154 - -
Vivi2g00485 1193 Gene3D Cupin 745 1157 - -
Vivi2g00485 1193 MobiDBLite consensus disorder prediction 298 332 - -
Vivi2g00485 1193 SUPERFAMILY Clavaminate synthase-like 753 1172 - -
Vivi2g00485 1193 MobiDBLite consensus disorder prediction 220 259 - -
Vivi2g00485 1193 MobiDBLite consensus disorder prediction 1 30 - -
Vivi2g00485 1193 ProSiteProfiles JmjC domain profile. 874 1148 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00485 Vivi-Chr2 12763672 12778368 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi2g00485 JmjC 2.2e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00485 K15601 - gmx:100805723 1125.54