Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00477 ATGGAGAACGACACCGCCACCACCACCGCCACCGTCAACGGCACCGGAAATACGGCCAAAGTAGTTTCGAGCGGCGGCGGCGGAGGAGTAGGAGTCAAATCCAACAATCAAATCCGTGAAGAAGAACATTCCAATTTGAACGGCGAGGAAAACATACCAGAGAAAATGGAAGAGAAAGAAGAAGAAGAAGATGAAGACAAAGAGGAACAGCAACAACAACAACCTACTGGATCTGAAACCGCCGCTCAACAACCTTCCAGAACCCCTTTCAGTAATCTCAGCCAAGTCGATGCTGACCTCGCCCTCGCCAGAACTCTTCAAGAGCAGGAAAGGGCATACATGATGCTGAGAATGAATAATGATGGAAGTGACTACGGAAGTTGGGAGGGTGGGAGTTATTTGCATGACGATGGAGATGATTTTGATGATCTGCACGATGGAACTGATGTAGACGAGGAGGATGAGGATGACCAGGATGACGATAATGAGGAATATGAAGATGAAGATGTATTTGATGTTCATGCTCATGCTAGTGCTGGAGAACATGATAATGCCACCATTGAATTTGATCCAGAGCTGTTTTCAAATGATGAAGCCTATGCAAGAGCATTACAGGAGGCTGAAGAGAGGGAGATGGCAGCTAGACTGTTGGCACTTGCTGGGATACATGATCTTTCGTTTTCAATTGCAGAGGACGCTGAGGACATGGAGGAACATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTCGATCCAGATGAACTCTCGTATGAGGAACTCCTGGCATTAGGTGAGGTAGTAGGAACTGAGAGCAGAGGTCTTTCGACTGATACTATTGCCGGTTTGCCTTCAGTCAACTATAAGACGGGGAGTGATCAACACGGGAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGATGAGTCCTTGACACTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACAGAGGTATCTGCTTCGGGAAGCAACTTGTAG 1056 0.4688 MENDTATTTATVNGTGNTAKVVSSGGGGGVGVKSNNQIREEEHSNLNGEENIPEKMEEKEEEEDEDKEEQQQQQPTGSETAAQQPSRTPFSNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDDGDDFDDLHDGTDVDEEDEDDQDDDNEEYEDEDVFDVHAHASAGEHDNATIEFDPELFSNDEAYARALQEAEEREMAARLLALAGIHDLSFSIAEDAEDMEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIAGLPSVNYKTGSDQHGSNDSCVICRVDYEDDESLTLLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00477 351 MobiDBLite consensus disorder prediction 36 54 - -
Vivi2g00477 351 MobiDBLite consensus disorder prediction 1 22 - -
Vivi2g00477 351 FunFam E3 ubiquitin ligase BIG BROTHER-related 266 347 - -
Vivi2g00477 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 347 IPR013083 -
Vivi2g00477 351 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 45 349 IPR043312 -
Vivi2g00477 351 ProSiteProfiles Zinc finger RING-type profile. 300 341 IPR001841 -
Vivi2g00477 351 MobiDBLite consensus disorder prediction 123 165 - -
Vivi2g00477 351 Coils Coil 52 72 - -
Vivi2g00477 351 MobiDBLite consensus disorder prediction 1 95 - -
Vivi2g00477 351 MobiDBLite consensus disorder prediction 55 69 - -
Vivi2g00477 351 SUPERFAMILY RING/U-box 291 345 - -
Vivi2g00477 351 MobiDBLite consensus disorder prediction 142 165 - -
Vivi2g00477 351 SMART ring_2 300 340 IPR001841 -
Vivi2g00477 351 Pfam Ring finger domain 298 340 IPR001841 -
Vivi2g00477 351 MobiDBLite consensus disorder prediction 73 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00477 Vivi-Chr2 12701857 12707217 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00477 86 235 C3H Transcription Factor Family AT3G19910 51.656 2.40e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00477 K19045 - gmx:100787418 446.432