Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00476 ATGGAGAACGACACCGCCACCACCACCGCCACCGTCAACGGCACCGGAAATACGGCCAAAGTAGTTTCGAGCGGCGGCGGCGGAGGAGTAGGAGTCAAATCCAACAATCAAATCCGTGAAGAAGAACATTCCAATTTGAACGGCGAGGAAAACATACCAGAGAAAATGGAAGAGAAAGAAGAAGAAGAAGATGAAGACAAAGAGGAACAGCAACAACAACAACCTACTGGATCTGAAACCGCCGCTCAACAACCTTCCAGAACCCCTTTCAGTAATCTCAGCCAAGTCGATGCTGACCTCGCCCTCGCCAGAACTCTTCAAGAGCAGGAAAGGGCATACATGATGCTGAGAATGAATAATGATGGAAGTGACTACGGAAGTTGGGAGGGTGGGAGTTATTTGCATGACGATGGAGATGATTTTGATGATCTGCACGATGGAACTGATGTAGACGAGGAGGATGAGGATGACCAGGATGACGATAATGAGGAATATGAAGATGAAGATGTATTTGATGTTCATGCTCATGCTAGTGCTGGAGAACATGATAATGCCACCATTGAATTTGATCCAGAGCTGTTTTCAAATGATGAAGCCTATGCAAGAGCATTACAGGAGGCTGAAGAGAGGGAGATGGCAGCTAGACTGTTGGCACTTGCTGGGATACATGATCAGGACGCTGAGGACATGGAGGAACATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTCGATCCAGATGAACTCTCGTATGAGGAACTCCTGGCATTAGGTGAGGTAGTAGGAACTGAGAGCAGAGGTCTTTCGACTGATACTATTGCCGGTTTGCCTTCAGTCAACTATAAGACGGGGAGTGATCAACACGGGAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGATGAGTCCTTGACACTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACAGAGGTATCTGCTTCGGGAAGCAACTTGTAG 1038 0.4711 MENDTATTTATVNGTGNTAKVVSSGGGGGVGVKSNNQIREEEHSNLNGEENIPEKMEEKEEEEDEDKEEQQQQQPTGSETAAQQPSRTPFSNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDDGDDFDDLHDGTDVDEEDEDDQDDDNEEYEDEDVFDVHAHASAGEHDNATIEFDPELFSNDEAYARALQEAEEREMAARLLALAGIHDQDAEDMEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIAGLPSVNYKTGSDQHGSNDSCVICRVDYEDDESLTLLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00476 345 MobiDBLite consensus disorder prediction 36 54 - -
Vivi2g00476 345 Pfam Ring finger domain 292 334 IPR001841 -
Vivi2g00476 345 MobiDBLite consensus disorder prediction 1 22 - -
Vivi2g00476 345 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 45 343 IPR043312 -
Vivi2g00476 345 MobiDBLite consensus disorder prediction 123 165 - -
Vivi2g00476 345 ProSiteProfiles Zinc finger RING-type profile. 294 335 IPR001841 -
Vivi2g00476 345 Coils Coil 52 72 - -
Vivi2g00476 345 SMART ring_2 294 334 IPR001841 -
Vivi2g00476 345 FunFam E3 ubiquitin ligase BIG BROTHER-related 260 341 - -
Vivi2g00476 345 MobiDBLite consensus disorder prediction 1 95 - -
Vivi2g00476 345 MobiDBLite consensus disorder prediction 55 69 - -
Vivi2g00476 345 SUPERFAMILY RING/U-box 285 339 - -
Vivi2g00476 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 341 IPR013083 -
Vivi2g00476 345 MobiDBLite consensus disorder prediction 142 165 - -
Vivi2g00476 345 MobiDBLite consensus disorder prediction 73 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00476 Vivi-Chr2 12701857 12707217 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00476 86 238 C3H Transcription Factor Family AT3G19910 50.649 4.54e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00476 K19045 - gmx:100787418 453.366