Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00475 ATGGAGAACGACACCGCCACCACCACCGCCACCGTCAACGGCACCGGAAATACGGCCAAAGTAGTTTCGAGCGGCGGCGGCGGAGGAGTAGGAGTCAAATCCAACAATCAAATCCGTGAAGAAGAACATTCCAATTTGAACGGCGAGGAAAACATACCAGAGAAAATGGAAGAGAAAGAAGAAGAAGAAGATGAAGACAAAGAGGAACAGCAACAACAACAACCTACTGGATCTGAAACCGCCGCTCAACAACCTTCCAGAACCCCTTTCAGTAATCTCAGCCAAGTCGATGCTGACCTCGCCCTCGCCAGAACTCTTCAAGAGCAGGAAAGGGCATACATGATGCTGAGAATGAATAATGATGGAAGTGACTACGGAAGTTGGGAGGGTGGGAGTTATTTGCATGACGATGGAGATGATTTTGATGATCTGCACGATGGAACTGATGTAGACGAGGAGGATGAGGATGACCAGGATGACGATAATGAGGAATATGAAGATGAAGATGTATTTGATGTTCATGCTCATGCTAGTGCTGGAGAACATGATAATGCCACCATTGAATTTGATCCAGAGCTGTTTTCAAATGATGAAGCCTATGCAAGAGCATTACAGGAGGCTGAAGAGAGGGAGATGGCAGCTAGACTGTTGGCACTTGCTGGGATACATGATCAATCTCTAGTTTCGTTTTCAATTGCAGAGGACGCTGAGGACATGGAGGAACATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTCGATCCAGATGAACTCTCGTATGAGGAACTCCTGGCATTAGGTGAGGTAGTAGGAACTGAGAGCAGAGGTCTTTCGACTGATACTATTGCCGGTTTGCCTTCAGTCAACTATAAGACGGGGAGTGATCAACACGGGAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGATGAGTCCTTGACACTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACAGAGGTATCTGCTTCGGGAAGCAACTTGTAG 1065 0.4676 MENDTATTTATVNGTGNTAKVVSSGGGGGVGVKSNNQIREEEHSNLNGEENIPEKMEEKEEEEDEDKEEQQQQQPTGSETAAQQPSRTPFSNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDDGDDFDDLHDGTDVDEEDEDDQDDDNEEYEDEDVFDVHAHASAGEHDNATIEFDPELFSNDEAYARALQEAEEREMAARLLALAGIHDQSLVSFSIAEDAEDMEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIAGLPSVNYKTGSDQHGSNDSCVICRVDYEDDESLTLLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL 354
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00475 354 MobiDBLite consensus disorder prediction 36 54 - -
Vivi2g00475 354 ProSiteProfiles Zinc finger RING-type profile. 303 344 IPR001841 -
Vivi2g00475 354 MobiDBLite consensus disorder prediction 1 22 - -
Vivi2g00475 354 FunFam E3 ubiquitin ligase BIG BROTHER-related 269 350 - -
Vivi2g00475 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 350 IPR013083 -
Vivi2g00475 354 SMART ring_2 303 343 IPR001841 -
Vivi2g00475 354 Pfam Ring finger domain 301 343 IPR001841 -
Vivi2g00475 354 MobiDBLite consensus disorder prediction 123 165 - -
Vivi2g00475 354 Coils Coil 52 72 - -
Vivi2g00475 354 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 45 352 IPR043312 -
Vivi2g00475 354 MobiDBLite consensus disorder prediction 1 95 - -
Vivi2g00475 354 MobiDBLite consensus disorder prediction 55 69 - -
Vivi2g00475 354 SUPERFAMILY RING/U-box 294 348 - -
Vivi2g00475 354 MobiDBLite consensus disorder prediction 142 165 - -
Vivi2g00475 354 MobiDBLite consensus disorder prediction 73 95 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi2g00475 Vivi-Chr2 12701857 12707218 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00475 86 238 C3H Transcription Factor Family AT3G19910 50.000 5.15e-34 124
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00475 K19045 - gmx:100787418 445.662