Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00460 ATGTCTCGGACAAACCGTGTCCCACCTGCTTTTCAGTCTATTAAATCACTGCCACCCGAGTACAAGTATGATAATAATAGAAACACTGGTCAAGTGGAGAAGCAGGGAAATGTTAAATTGAGAAGCTCTGATCTGATTCGATCAAATGGTCGTGAAAATGGTGCAATATTAGGGGAGGTTTCTAAGGAAGCGAATAACGGTGCTGGCGACATGGATCTCTTTGACGAAGATTCTCCATATGGTGGAAACGGTGAATCATTTGAGGACAGGCCGTCCTATGCTGATGAGGACTCGATATCTGCTTCGTTGCCCCAACCGTCAATTTCAACGTCCTCTAGGGAAAACAGATGGAGTGATACGACTCCTTATGCTTCAAAGAAGAAGCTTCAGTCTTGGTTTCAACTTTCTAATGGGGATTGGGAACTGGTAAAGATAATATCAACTTCTGGAGTAGAATCTGTCATTTCACTGCCTGATGGGAAAGTTTTAAAAGTCAAAGATGATAGTTTGGTACCGGCAAATCCTGATATTCTTGATGGAGTGGATGACCTGATGCAACTTAGTTATTTAAATGAACCGTCAGTTTTATACAACCTGCAATATCGATACAATCAAAATATGATCTATACAAAAGCAGGGCCTGTTTTGGTGGCAGTAAATCCCTTTAAGAAAGTTCCTCTGTACGGTATTGACTATATTGAAGCCTACAAGTGTAAGGCAAATGAAAGCCCTCATGTTTATGCAATTACTGATTCAGCTATCAGAGAAATGATCCGAGATGAAGTTAATCAATCAATAATTATAAGTGGTGAGAGTGGAGCAGGGAAGACTGAGACAGCAAAAATAGCAATGCAGTACTTGGCTGCCCTTGGTGGTGGAAGTGGAATAGAGCATGAAATATTAAAGACTAATCCAATACTAGAAGCCTTTGGCAATGGAAAAACATTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTTAGTGAAACTGGAAAAATATCTTGTGCTAATATTCAAACATTTTTGTTAGAAAAGTCTAGAGTAGTCCAATGCAATGAAGGGGAAAGGTCATATCATATATTTTATCAGCTATGTGCTGGAGCACCGCCATCTCTCAGGGAGAAGCTAAATCTACAAAGTGTGGAAGACTATAAATATCTAAGGCAGAGCAATTGTTATTCAATTACTGGTGTTGATGATGCAGAAGAATTTCGCATAGTCACGGATGCTCTAGATGTTGTCCACATCAGCAAAGGAGATCAGGAGAATGTATTTGCAATGCTTGCTGCAGTGTTATGGTTGGGAAACATATCATTTACTGTGATTGATAATGAAAATCATATTCAAGCTGTTGAGGATGAGGGGCTGTTCAGCACTGCCAAGTTGATTGGCTGTGACATTGAAGATCTGAAGTTGACTTTATCAACTCGCAAAATGAAAGTTGGTAATGATATTATTGTCCAGAAGTTGACGCTATCTCAGGCTAGTGATGCAAGAGATGCTTTGGCGAAGTCTATATATGCATGTCTGTTTGATTGGCTGGTTGAACAAATAAACAAGTCACTAGCTGTTGGCAAAAGAAGAACTGGGAGATCTATCAGTATCCTAGATATTTATGGCTTTGAGTCATTCAATAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCAAATGAAAGATTACAGCAACACTTCAATCGTCATTTGTTCAAGTTGGAACAGGAGGAATATATCCAAGATGGCATTGATTGGGCTAAAGTTGAATTTGAAGACAACCAAGACTGCCTTAATCTTTTTGAAAAGAAACCACTGGGGCTACTATCCTTATTAGACGAAGAATCCACTTTTCCAAATGGTACGGATTTAACATTTGCCAACAAACTTAAGCAGCATTTGAATTCTAATTCATGCTTCAAAGGAGAACGGGAAAAAGCCTTTACTGTTCGTCATTATGCAGGAGAGGTCACTTATGATACAACTGCATTCTTAGAAAAGAACAGGGACCTATTGCACGTGGATTCCATCCAACTTCTATCCTCAAGCAAATGTCATCTTCCTCAGATATTTGCATCCTATATGCTTACTCAGTCTGAGAAGCCTGCAGTTGGTCCCTTGCACAAGTTAGGTGGGGCAGATTCCCAAAAGCTTAGTGTTGCCACAAAATTCAAGGGACAATTGTTTCAACTGATGCAGCGTTTAGAGAGTACCACACCTCATTTTATTCGCTGCATTAAGCCCAATAATCTCCAATCACCAGGATCATATGAGCAAGGACTTGTCCTGCAGCAGTTGAGATGTTGTGGGGTCCTAGAAGTGGTTAGAATATCCCGATCAGGCTTTCCCACTAGAATGTCTCACCAAAAGTTTGCGAAAAGATATGGTTTTCTTCTCCTTGAAAATGATGCGTCTCAGGATCCACTTAGTGTTTCTGTTGCTATTCTTCATCAGTTTAACATTTTGCCTGAGATGTATCAAGTTGGCTACACCAAATTATTCTTCCGAACTGGGCAGATTGGAGTGCTCGAAGATACTAGAAATCGTACCCTCCATGGCATTTTACGTGTACAAAGTTGCTTCAGGGGTTATCAAGCTCGTTGTCTTCGCAAGGAGCTTTGGAGAGGAATCACTACTCTTCAGTCATTTATTAGAGGAGAGAAAAGCAGAAGAGGGTTCGCAACTTCGCTTCAGAGACACAGAGCGGCAGTTATTATACAGAAGCACGTGAAAACAAGATATGCAACAAACAGAATGAAAATGACCACTGGTGCTGCAGTTGTCATACAATCATTTATTCGGGGATGGTTAGTCAGAAGATGCTCAGGAGATATAGGATTTTTAAAACCCGGAGGCATGAAGACTAACGAGGCAGATGAGGTTCTGGTGAAGGCGTCTTTCCTAGCTGAATTACAGCGCAGGGTGCTTAAGGCGGAAGCCGGCCTGAGAGAGAAAGAAGAGGAAAATGACATCCTTCATCAACGGCTTCAACAGTACGAGAGCAGATGGTCTGAATATGAACTAAAAATGAAATCCATGGAAGAAGTATGGCAGAAGCAAATGAGATCCTTACAATCAAGCCTCTCCATTGCAAAGAAGAGTCTTGCTATGGATGATTCCGATAGAAATTCAGACGCTTCTGTTAATGCAAGTGAGGACAGGGAATACAGCTGGGATATTGGAAATAACCACAGACGCCAGGAAAGCAGTGGTGGAACAAGATCTATGAGTGCTGGTTTGAGTGTTATAAGTCGGTTGGCTGAAGAATTTGAGCAAAGGAGTCAAGTGTTTGGTGATGATGCCAAGTTCTTGGTTGAGGTAAAATCTGGTCAAATTGAAGCAAGCCTAAACCCAGACAGAGAGCTTAGAAGGTTAAAACAAATGTTTGAAGGTTGGAAAAAGGACTATGCAACCAGATTGCGTGAAACGAAGGTTATTTTAAATAAACTTGGAAGTGAAGATGGTTCATCAATAGAAAAAGCTAAGAAGAAGTGGTGGGGAAGAAGGAACAGTACTAGGATGAGTTGA 3537 0.4066 MSRTNRVPPAFQSIKSLPPEYKYDNNRNTGQVEKQGNVKLRSSDLIRSNGRENGAILGEVSKEANNGAGDMDLFDEDSPYGGNGESFEDRPSYADEDSISASLPQPSISTSSRENRWSDTTPYASKKKLQSWFQLSNGDWELVKIISTSGVESVISLPDGKVLKVKDDSLVPANPDILDGVDDLMQLSYLNEPSVLYNLQYRYNQNMIYTKAGPVLVAVNPFKKVPLYGIDYIEAYKCKANESPHVYAITDSAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEHEILKTNPILEAFGNGKTLRNDNSSRFGKLIEIHFSETGKISCANIQTFLLEKSRVVQCNEGERSYHIFYQLCAGAPPSLREKLNLQSVEDYKYLRQSNCYSITGVDDAEEFRIVTDALDVVHISKGDQENVFAMLAAVLWLGNISFTVIDNENHIQAVEDEGLFSTAKLIGCDIEDLKLTLSTRKMKVGNDIIVQKLTLSQASDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFKGEREKAFTVRHYAGEVTYDTTAFLEKNRDLLHVDSIQLLSSSKCHLPQIFASYMLTQSEKPAVGPLHKLGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPGSYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFAKRYGFLLLENDASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGYQARCLRKELWRGITTLQSFIRGEKSRRGFATSLQRHRAAVIIQKHVKTRYATNRMKMTTGAAVVIQSFIRGWLVRRCSGDIGFLKPGGMKTNEADEVLVKASFLAELQRRVLKAEAGLREKEEENDILHQRLQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAMDDSDRNSDASVNASEDREYSWDIGNNHRRQESSGGTRSMSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQIEASLNPDRELRRLKQMFEGWKKDYATRLRETKVILNKLGSEDGSSIEKAKKKWWGRRNSTRMS 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00460 1178 Gene3D Myosin VI head, motor domain, U50 subdomain 422 719 - -
Vivi2g00460 1178 Gene3D - 547 741 - -
Vivi2g00460 1178 Pfam IQ calmodulin-binding motif 928 943 IPR000048 GO:0005515
Vivi2g00460 1178 Pfam IQ calmodulin-binding motif 857 871 IPR000048 GO:0005515
Vivi2g00460 1178 ProSiteProfiles Myosin motor domain profile. 179 851 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vivi2g00460 1178 Gene3D - 904 945 - -
Vivi2g00460 1178 Gene3D - 855 903 - -
Vivi2g00460 1178 Gene3D - 361 420 - -
Vivi2g00460 1178 Pfam Myosin head (motor domain) 181 839 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vivi2g00460 1178 ProSiteProfiles IQ motif profile. 855 882 IPR000048 GO:0005515
Vivi2g00460 1178 PRINTS Myosin heavy chain signature 590 618 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vivi2g00460 1178 PRINTS Myosin heavy chain signature 537 565 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vivi2g00460 1178 PRINTS Myosin heavy chain signature 209 228 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vivi2g00460 1178 PRINTS Myosin heavy chain signature 305 332 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vivi2g00460 1178 PRINTS Myosin heavy chain signature 263 288 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vivi2g00460 1178 MobiDBLite consensus disorder prediction 1038 1079 - -
Vivi2g00460 1178 MobiDBLite consensus disorder prediction 1 121 - -
Vivi2g00460 1178 Coils Coil 971 1019 - -
Vivi2g00460 1178 ProSiteProfiles IQ motif profile. 878 905 IPR000048 GO:0005515
Vivi2g00460 1178 Gene3D - 784 852 - -
Vivi2g00460 1178 MobiDBLite consensus disorder prediction 22 49 - -
Vivi2g00460 1178 SMART MYSc_2a 173 852 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vivi2g00460 1178 FunFam Myosin heavy chain 361 417 - -
Vivi2g00460 1178 ProSiteProfiles IQ motif profile. 925 954 IPR000048 GO:0005515
Vivi2g00460 1178 PANTHER MYOSIN 172 1169 - -
Vivi2g00460 1178 MobiDBLite consensus disorder prediction 98 121 - -
Vivi2g00460 1178 Gene3D Kinesin motor domain 182 780 IPR036961 -
Vivi2g00460 1178 FunFam Unconventional myosin-XIX 549 741 - -
Vivi2g00460 1178 CDD MYSc_Myo8 193 839 IPR036022 -
Vivi2g00460 1178 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 126 175 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vivi2g00460 1178 MobiDBLite consensus disorder prediction 1038 1052 - -
Vivi2g00460 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 896 IPR027417 -
Vivi2g00460 1178 SMART iq_5 852 874 IPR000048 GO:0005515
Vivi2g00460 1178 SMART iq_5 901 923 IPR000048 GO:0005515
Vivi2g00460 1178 SMART iq_5 924 946 IPR000048 GO:0005515
Vivi2g00460 1178 SMART iq_5 875 897 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00460 Vivi-Chr2 12415210 12427468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00460 4 1176 Myosins gene family AT1G50360 75.489 0.0 1790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00460 - - gmx:100782618 2080.45